CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10023568m.g
(
Capsella rubella
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Carubv10023568m.g
T297543_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NTL8
M00975_2.00
Arabidopsis thaliana
TWNCYYHNNN
NNNDRRGNWA
PBM
Lindemose et al.(2014)
NTL8
0.961
0.991
NTL8
M07190_2.00
Arabidopsis thaliana
NTTNCTTCDHNNNNARGNA
TNCYTNNNNDHGAAGNAAN
Dap-seq
OMalley et al.(2016)
NTL8_col
0.961
0.991
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10023568m
NAC/NAM
15
140
FPGFRFSPTDVELISYYLRRKIDGDERSVAVIAEVEIYKFEPWDLPEESKLKSENEWFYFCARGRKYPHGSQSRRATQLGYWKATGKERSVKSGNQVVGTKRTLVFHIGRAPRGERTEWIMHEYCI
Links
Other
NAC/NAM
family TFs
Other
Capsella rubella
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.3125s0012
Capsella grandiflora
Cagra.3125s0012
I
0.962
NTL8
Arabidopsis thaliana
AT2G27300
D
0.961
Bra012024
Brassica rapa
Bra012024
I
0.955
Bo4g075560
Brassica oleracea
Bo4g075560
I
0.955
Thhalv10002300m.g
Eutrema salsugineum
Thhalv10002300m.g
I
0.937
Thhalv10002027m.g
Eutrema salsugineum
Thhalv10002027m.g
I
0.935
Bostr.28794s0029
Boechera stricta
Bostr.28794s0029
I
0.928
ANAC040
Arabidopsis lyrata
fgenesh2_kg.4__689__AT2G27300.1
I
0.918
Thhalv10002040m.g
Eutrema salsugineum
Thhalv10002040m.g
I
0.912