Carubv10026643m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10026643m.g T297547_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
anac103
M07243_2.00 		Arabidopsis thaliana
TDVCTTGNDNHNCAAGTTWYY
RRWAACTTGNDNHNCAAGBHA		 Dap-seq
OMalley et al.(2016)
ANAC103_col_a 		0.955 0.893
anac103
M07244_2.00 		Arabidopsis thaliana
TTGNDNHNCAAGYTWY
RWARCTTGNDNHNCAA		 Dap-seq
OMalley et al.(2016)
ANAC103_colamp_a 		0.955 0.893
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026643m NAC/NAM 7 133

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0248s0087 Capsella grandiflora Cagra.0248s0087 I 0.973
Bostr.0568s0398 Boechera stricta Bostr.0568s0398 I 0.962
anac103 Arabidopsis lyrata fgenesh2_kg.8__2417__AT5G64060.1 I 0.957
anac103 Arabidopsis thaliana AT5G64060 D 0.955
Bo3g101690 Brassica oleracea Bo3g101690 I 0.940
Bra024263 Brassica rapa Bra024263 I 0.940
Thhalv10004501m.g Eutrema salsugineum Thhalv10004501m.g I 0.935
30136.m001048 Ricinus communis 30136.m001048 N 0.888
Bra028640 Brassica rapa Bra028640 I 0.880
cassava2514.valid.m1 Manihot esculenta cassava2514.valid.m1 I 0.877
cassava2513.valid.m1 Manihot esculenta cassava2513.valid.m1 I 0.877
cassava2515.valid.m1 Manihot esculenta cassava2515.valid.m1 I 0.877
cassava43227.valid.m1 Manihot esculenta cassava43227.valid.m1 N 0.875
cassava43226.valid.m1 Manihot esculenta cassava43226.valid.m1 N 0.875
Thhalv10013785m.g Eutrema salsugineum Thhalv10013785m.g N 0.874