CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10026697m.g
(
Capsella rubella
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Carubv10026697m.g
T297548_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC101
M07241_2.00
Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA
Dap-seq
OMalley et al.(2016)
VND6_colamp_a
0.995
0.991
NAC101
M07242_2.00
Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND6_col_v31
0.995
0.991
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.890
0.579
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.890
0.579
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.890
0.579
AT3G12910
M07204_2.00
Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR
Dap-seq
OMalley et al.(2016)
AT3G12910_col_a
0.882
0.526
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.875
0.561
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10026697m
NAC/NAM
8
135
PPGYRFHPTDEELVDYYLKNKVAYPGMQVDVIKDVDLYKIEPWDIQELCGRGTGEEREWYFFSHKDKKYPTGTRTNRATGSGFWKATGRDKAIYSKQELVGMRKTLVFYKGRAPNGQKSDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Capsella rubella
TFs
228 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.4003s0027
Capsella grandiflora
Cagra.4003s0027
I
0.996
Bra029266
Brassica rapa
Bra029266
I
0.995
Bo3g107700
Brassica oleracea
Bo3g107700
I
0.995
Bra035896
Brassica rapa
Bra035896
I
0.995
Bostr.0568s0569
Boechera stricta
Bostr.0568s0569
I
0.995
VND6
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001814
I
0.995
Bo2g164090
Brassica oleracea
Bo2g164090
I
0.995
Bra010077
Brassica rapa
Bra010077
I
0.995
NAC101
Arabidopsis thaliana
AT5G62380
D
0.995
Thhalv10004488m.g
Eutrema salsugineum
Thhalv10004488m.g
I
0.995
Bo9g014940
Brassica oleracea
Bo9g014940
I
0.992
Cla011742
Citrullus lanatus
Cla011742
I
0.983
NAC026
Arabidopsis thaliana
AT1G62700
I
0.983
mgf002365m
Mimulus guttatus
mgf002365m
I
0.983
Thhalv10023502m.g
Eutrema salsugineum
Thhalv10023502m.g
I
0.983
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
0.940
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.936
Si022723m.g
Setaria italica
Si022723m.g
I
0.936
Si036303m.g
Setaria italica
Si036303m.g
I
0.934
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.933
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.932
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
0.928
mgf004020m
Mimulus guttatus
mgf004020m
I
0.923
GRMZM2G052239
Zea mays
GRMZM2G052239
I
0.923
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
0.921
Gorai.010G236700
Gossypium raimondii
Gorai.010G236700
I
0.918
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.917
MDP0000285555
Malus domestica
MDP0000285555
I
0.917
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.917
SapurV1A.0076s0070
Salix purpurea
SapurV1A.0076s0070
I
0.916
mgf019285m
Mimulus guttatus
mgf019285m
I
0.910
Solyc08g074300.2
Solanum lycopersicum
Solyc08g074300.2
I
0.909
Si022714m.g
Setaria italica
Si022714m.g
I
0.909
MTR_2g068920
Medicago truncatula
MTR_2g068920
I
0.909
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.909
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.908
F775_30297
Aegilops tauschii
F775_30297
I
0.908
Bra034719
Brassica rapa
Bra034719
I
0.908
Traes_7DL_BDD45DB24
Triticum aestivum
Traes_7DL_BDD45DB24
I
0.908
TRIUR3_29250
Triticum urartu
TRIUR3_29250
I
0.908
MTR_2g068880
Medicago truncatula
MTR_2g068880
I
0.907
F775_13961
Aegilops tauschii
F775_13961
I
0.907
Ca_13571
Cicer arietinum
Ca_13571
I
0.906
LPERR12G01440
Leersia perrieri
LPERR12G01440
I
0.905
POPTR_0003s14950
Populus trichocarpa
POPTR_0003s14950
I
0.905
Gorai.006G088400
Gossypium raimondii
Gorai.006G088400
I
0.905
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.904
SapurV1A.0059s0580
Salix purpurea
SapurV1A.0059s0580
I
0.904
POPTR_0004s04920
Populus trichocarpa
POPTR_0004s04920
I
0.903
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
0.903
PK26157.1
Cannabis sativa
PK26157.1
I
0.902
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.902
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.902
VIT_19s0027g00840
Vitis vinifera
VIT_19s0027g00840
I
0.902
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.902
Gorai.010G171100
Gossypium raimondii
Gorai.010G171100
I
0.902
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.902
PGSC0003DMG400029593
Solanum tuberosum
PGSC0003DMG400029593
I
0.901
LPERR11G01300
Leersia perrieri
LPERR11G01300
I
0.900
gene21248-v1.0-hybrid
Fragaria vesca
gene21248-v1.0-hybrid
I
0.900
SapurV1A.0129s0210
Salix purpurea
SapurV1A.0129s0210
I
0.900
Cagra.27691s0001
Capsella grandiflora
Cagra.27691s0001
I
0.900
GLYMA12G00760
Glycine max
GLYMA12G00760
I
0.899
30147.m014211
Ricinus communis
30147.m014211
I
0.899
Pm019488
Prunus mume
Pm019488
I
0.898
OPUNC05G14600
Oryza punctata
OPUNC05G14600
I
0.898
VIT_16s0022g00690
Vitis vinifera
VIT_16s0022g00690
I
0.898
ORUFI05G17750
Oryza rufipogon
ORUFI05G17750
I
0.898
ONIVA05G17220
Oryza nivara
ONIVA05G17220
I
0.898
Pm019490
Prunus mume
Pm019490
I
0.898
OGLUM05G17550
Oryza glumaepatula
OGLUM05G17550
I
0.898
ORGLA05G0143100
Oryza glaberrima
ORGLA05G0143100
I
0.898
OS05G0415400
Oryza sativa
OS05G0415400
I
0.898
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.898
BGIOSGA018048
Oryza indica
BGIOSGA018048
I
0.898
OBART05G16540
Oryza barthii
OBART05G16540
I
0.898
POPTR_0012s14660
Populus trichocarpa
POPTR_0012s14660
I
0.898
PRUPE_ppa020139mg
Prunus persica
PRUPE_ppa020139mg
I
0.898
TCM_035160
Theobroma cacao
TCM_035160
I
0.898
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.897
mgf015836m
Mimulus guttatus
mgf015836m
I
0.897
POPTR_0015s14770
Populus trichocarpa
POPTR_0015s14770
I
0.897
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.896
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.896
Sb07g005610
Sorghum bicolor
Sb07g005610
I
0.896
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.895
cassava47039.m1
Manihot esculenta
cassava47039.m1
I
0.895
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.895
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.895
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.895
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
0.895
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.894
mgf013201m
Mimulus guttatus
mgf013201m
I
0.894
Ciclev10006988m.g
Citrus clementina
Ciclev10006988m.g
I
0.894
Gorai.001G048200
Gossypium raimondii
Gorai.001G048200
I
0.894
Eucgr.A02887
Eucalyptus grandis
Eucgr.A02887
I
0.894
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.894
TCM_014939
Theobroma cacao
TCM_014939
I
0.894
Si032702m.g
Setaria italica
Si032702m.g
I
0.893
mgf021916m
Mimulus guttatus
mgf021916m
I
0.893
orange1.1g018596m.g
Citrus sinensis
orange1.1g018596m.g
I
0.893
MDP0000206868
Malus domestica
MDP0000206868
I
0.892
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.892
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.892
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.892
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.892
TCM_029321
Theobroma cacao
TCM_029321
I
0.892
OB09G25590
Oryza brachyantha
OB09G25590
I
0.892
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
0.892
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.892
VIT_02s0154g00020
Vitis vinifera
VIT_02s0154g00020
I
0.891
Cla006372
Citrullus lanatus
Cla006372
I
0.891
Cucsa.251620
Cucumis sativus
Cucsa.251620
I
0.891
Solyc06g034340.1
Solanum lycopersicum
Solyc06g034340.1
I
0.891
Sb08g022560
Sorghum bicolor
Sb08g022560
I
0.891
PGSC0003DMG400021576
Solanum tuberosum
PGSC0003DMG400021576
I
0.891
Bra033239
Brassica rapa
Bra033239
I
0.890
POPTR_0001s00220
Populus trichocarpa
POPTR_0001s00220
I
0.890
GLYMA05G32850
Glycine max
GLYMA05G32850
I
0.890
SapurV1A.1275s0070
Salix purpurea
SapurV1A.1275s0070
I
0.890
VIT_19s0027g00910
Vitis vinifera
VIT_19s0027g00910
I
0.890
28200.m000189
Ricinus communis
28200.m000189
I
0.890
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.890
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.890
TCM_016035
Theobroma cacao
TCM_016035
I
0.890
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.890
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.890
POPTR_0003s11250
Populus trichocarpa
POPTR_0003s11250
I
0.890
NAC002
Arabidopsis thaliana
AT1G01720
D
0.890
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.890
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
0.890
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.890
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.890
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
0.889
SapurV1A.0365s0200
Salix purpurea
SapurV1A.0365s0200
I
0.889
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.889
OPUNC04G28220
Oryza punctata
OPUNC04G28220
I
0.888
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.888
MTR_8g094580
Medicago truncatula
MTR_8g094580
I
0.888
cassava46384.m1
Manihot esculenta
cassava46384.m1
I
0.888
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.888
cassava39074.m1
Manihot esculenta
cassava39074.m1
I
0.887
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.887
OMERI05G14410
Oryza meridionalis
OMERI05G14410
I
0.887
VIT_06s0004g00020
Vitis vinifera
VIT_06s0004g00020
I
0.887
BGIOSGA014034
Oryza indica
BGIOSGA014034
I
0.886
ORUFI08G03870
Oryza rufipogon
ORUFI08G03870
I
0.886
PGSC0003DMG400039898
Solanum tuberosum
PGSC0003DMG400039898
I
0.886
OS04G0691300
Oryza sativa
OS04G0691300
I
0.886
OGLUM04G30580
Oryza glumaepatula
OGLUM04G30580
I
0.886
OS08G0157900
Oryza sativa
OS08G0157900
I
0.886
SapurV1A.0634s0120
Salix purpurea
SapurV1A.0634s0120
I
0.886
ORUFI04G32410
Oryza rufipogon
ORUFI04G32410
I
0.886
ORGLA04G0270600
Oryza glaberrima
ORGLA04G0270600
I
0.886
BGIOSGA027623
Oryza indica
BGIOSGA027623
I
0.886
GRMZM2G167018
Zea mays
GRMZM2G167018
I
0.886
ONIVA04G29890
Oryza nivara
ONIVA04G29890
I
0.886
Cla023594
Citrullus lanatus
Cla023594
I
0.886
ONIVA08G03440
Oryza nivara
ONIVA08G03440
I
0.886
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.885
Lus10024601.g
Linum usitatissimum
Lus10024601.g
I
0.885
Lus10032238.g
Linum usitatissimum
Lus10032238.g
I
0.885
Cagra.5641s0055
Capsella grandiflora
Cagra.5641s0055
I
0.884
Carubv10014270m.g
Capsella rubella
Carubv10014270m.g
I
0.884
Bostr.3640s0064
Boechera stricta
Bostr.3640s0064
I
0.884
F775_20638
Aegilops tauschii
F775_20638
I
0.884
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.884
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
0.884
Traes_7AL_74CC91D39
Triticum aestivum
Traes_7AL_74CC91D39
I
0.884
Bo1g138800
Brassica oleracea
Bo1g138800
I
0.883
Bo3g065200
Brassica oleracea
Bo3g065200
I
0.883
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.883
Bra039353
Brassica rapa
Bra039353
I
0.883
SELMODRAFT_71305
Selaginella moellendorffii
SELMODRAFT_71305
I
0.883
SELMODRAFT_69090
Selaginella moellendorffii
SELMODRAFT_69090
I
0.883
Thhalv10021225m.g
Eutrema salsugineum
Thhalv10021225m.g
I
0.882
AT3G12910
Arabidopsis thaliana
AT3G12910
D
0.882
fgenesh2_kg.3__1353__AT3G12910.1
Arabidopsis lyrata
fgenesh2_kg.3__1353__AT3G12910.1
I
0.882
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.882
Lus10031721.g
Linum usitatissimum
Lus10031721.g
I
0.881
Lus10031142.g
Linum usitatissimum
Lus10031142.g
I
0.881
e_gw1.5.134.1
Physcomitrella patens
e_gw1.5.134.1
I
0.879
evm.TU.supercontig_3.311
Carica papaya
evm.TU.supercontig_3.311
I
0.877
GLYMA17G14700
Glycine max
GLYMA17G14700
I
0.876
GLYMA05G04250
Glycine max
GLYMA05G04250
I
0.876
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.876
Aquca_013_00692
Aquilegia coerulea
Aquca_013_00692
I
0.876
MLOC_59162
Hordeum vulgare
MLOC_59162
I
0.876
TRAES3BF002300010CFD_g
Triticum aestivum
TRAES3BF002300010CFD_g
I
0.876
BRADI2G57100
Brachypodium distachyon
BRADI2G57100
I
0.876
TRIUR3_14109
Triticum urartu
TRIUR3_14109
I
0.876
F775_28813
Aegilops tauschii
F775_28813
I
0.876
MDP0000320566
Malus domestica
MDP0000320566
I
0.875
BGIOSGA000374
Oryza indica
BGIOSGA000374
I
0.875
OB01G48340
Oryza brachyantha
OB01G48340
I
0.875
NAC48
Oryza sativa
OS01G0884300
D
0.875
OGLUM01G43820
Oryza glumaepatula
OGLUM01G43820
I
0.875
TCM_029796
Theobroma cacao
TCM_029796
I
0.875
ORUFI01G42940
Oryza rufipogon
ORUFI01G42940
I
0.875
OMERI01G36460
Oryza meridionalis
OMERI01G36460
I
0.875
ONIVA01G44460
Oryza nivara
ONIVA01G44460
I
0.875
OPUNC01G38300
Oryza punctata
OPUNC01G38300
I
0.875
ORGLA01G0334900
Oryza glaberrima
ORGLA01G0334900
I
0.875
Pm023559
Prunus mume
Pm023559
I
0.875
OBART01G39590
Oryza barthii
OBART01G39590
I
0.875
GLYMA09G36600
Glycine max
GLYMA09G36600
I
0.875
LPERR01G34090
Leersia perrieri
LPERR01G34090
I
0.875
PRUPE_ppa015786mg
Prunus persica
PRUPE_ppa015786mg
I
0.875
Sb03g041920
Sorghum bicolor
Sb03g041920
I
0.874
Pavir.Ea03621
Panicum virgatum
Pavir.Ea03621
I
0.874
GRMZM2G014653
Zea mays
GRMZM2G014653
I
0.873
Si002413m.g
Setaria italica
Si002413m.g
I
0.873
MDP0000226701
Malus domestica
MDP0000226701
I
0.873
Solyc04g009440.2
Solanum lycopersicum
Solyc04g009440.2
I
0.872
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.872
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.872
GLYMA06G47680
Glycine max
GLYMA06G47680
I
0.872
Sb02g006680
Sorghum bicolor
Sb02g006680
I
0.871
GRMZM2G079632
Zea mays
GRMZM2G079632
I
0.871
PK28510.1
Cannabis sativa
PK28510.1
I
0.871
GSMUA_Achr6G18720_001
Musa acuminata
GSMUA_Achr6G18720_001
I
0.870
OB08G13730
Oryza brachyantha
OB08G13730
I
0.870
OBART08G03460
Oryza barthii
OBART08G03460
I
0.870
OPUNC08G03310
Oryza punctata
OPUNC08G03310
I
0.870
ORGLA08G0029000
Oryza glaberrima
ORGLA08G0029000
I
0.870
OLONG_000105
Oryza longistaminata
OLONG_000105
I
0.870
OGLUM08G03540
Oryza glumaepatula
OGLUM08G03540
I
0.870
OMERI08G03500
Oryza meridionalis
OMERI08G03500
I
0.870