CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10001956m.g
(
Citrus clementina
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Ciclev10001956m.g
T297566_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.923
0.833
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.923
0.833
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.923
0.833
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.911
0.816
NAC025
M02368_2.00
Arabidopsis thaliana
YACGYAAY
RTTRCGTR
PBM
Weirauch et al.(2014)
pTH7656
0.889
0.702
NAC018
M07176_2.00
Arabidopsis thaliana
DYACGBMAYYD
HRRTKVCGTRH
Dap-seq
OMalley et al.(2016)
NAM_colamp_a
0.882
0.737
NAC018
M07177_2.00
Arabidopsis thaliana
WDNCKWNHNNNWYACGBMA
TKVCGTRWNNNDNWMGNHW
Dap-seq
OMalley et al.(2016)
NAM_col_v3a
0.882
0.737
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10001956m
NAC/NAM
10
133
PPGFRFHPTDEELVNHYLCRKCAGLPISVPIIAEIDLYKYDPWELPEMARYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRP
Ciclev10002273m
NAC/NAM
2
77
ARYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRP
Ciclev10002277m
NAC/NAM
2
77
ARYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRP
Links
Other
NAC/NAM
family TFs
Other
Citrus clementina
TFs
373 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy