Ciclev10001956m.g (Citrus clementina)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Ciclev10001956m.g T297566_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN

NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.923 0.833
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND

HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.923 0.833
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY

RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.923 0.833
NAC48
M11084_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.911 0.816
NAC025
M02368_2.00
Arabidopsis thaliana
YACGYAAY

RTTRCGTR
PBM
Weirauch et al.(2014)
pTH7656
0.889 0.702
NAC018
M07176_2.00
Arabidopsis thaliana
DYACGBMAYYD

HRRTKVCGTRH
Dap-seq
OMalley et al.(2016)
NAM_colamp_a
0.882 0.737
NAC018
M07177_2.00
Arabidopsis thaliana
WDNCKWNHNNNWYACGBMA

TKVCGTRWNNNDNWMGNHW
Dap-seq
OMalley et al.(2016)
NAM_col_v3a
0.882 0.737
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10001956m NAC/NAM 10 133
Ciclev10002273m NAC/NAM 2 77
Ciclev10002277m NAC/NAM 2 77

Links

Other NAC/NAM family TFs
Other Citrus clementina TFs

Invalid Input OrderBy

373 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action