CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.F01463
(
Eucalyptus grandis
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Eucgr.F01463
T297714_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G12910
M07204_2.00
Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR
Dap-seq
OMalley et al.(2016)
AT3G12910_col_a
0.977
0.748
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.933
0.591
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.933
0.591
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.933
0.591
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.923
0.565
JUB1
M07191_2.00
Arabidopsis thaliana
YKCCGTNNNNNHNMCGBHRY
RYDVCGKNDNNNNNACGGMR
Dap-seq
OMalley et al.(2016)
ANAC042_col_a
0.904
0.774
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.878
0.487
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.F01463.1
NAC/NAM
17
154
LPGFRFHPTDEELVGFYLRRKVDKKPMKIDHLISQIDIYKYDPWDLPSMTLLFLAEASDTGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGHECIGLKKTLVYYRGCAGKGTKTDWMMHEFRL
Eucgr.F01463.2
NAC/NAM
17
146
LPGFRFHPTDEELVGFYLRRKVDKKPMKIDHLISQIDIYKYDPWDLPKASDTGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGHECIGLKKTLVYYRGCAGKGTKTDWMMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Eucalyptus grandis
TFs
439 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy