CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene25163-v1.0-hybrid
(
Fragaria vesca
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
gene25163-v1.0-hybrid
T297990_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac058
M00886_2.00
Arabidopsis thaliana
CGTTGTCT
AGACAACG
PBM
Franco-Zorrilla et al.(2014)
ANAC58
0.898
0.877
anac058
M07210_2.00
Arabidopsis thaliana
CKTGHNNNRCAMGYWA
TWRCKTGYNNNDCAMG
Dap-seq
OMalley et al.(2016)
ANAC058_col_a
0.898
0.877
anac058
M07211_2.00
Arabidopsis thaliana
TDCKTGHNNNDCAMGHHA
TDDCKTGHNNNDCAMGHA
Dap-seq
OMalley et al.(2016)
ANAC058_colamp_a
0.898
0.877
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna25163.1-v1.0-hybrid
NAC/NAM
6
130
PPGFRFHPTDEELITYYLGRKVSDVSFTSQAVAVVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEILRQGVLVGMKKTLVFYKGRAPRGEKTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Fragaria vesca
TFs
55 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa007839mg
Prunus persica
PRUPE_ppa007839mg
I
0.950
GLYMA07G10240
Glycine max
GLYMA07G10240
I
0.950
MTR_6g084430
Medicago truncatula
MTR_6g084430
N
0.945
GLYMA08G04610
Glycine max
GLYMA08G04610
N
0.943
GLYMA05G35090
Glycine max
GLYMA05G35090
N
0.942
Ca_13012
Cicer arietinum
Ca_13012
N
0.942
GLYMA09G31650
Glycine max
GLYMA09G31650
N
0.933
Pm025184
Prunus mume
Pm025184
N
0.931
cassava9086.m1
Manihot esculenta
cassava9086.m1
I
0.919
MDP0000246482
Malus domestica
MDP0000246482
I
0.918
MDP0000153949
Malus domestica
MDP0000153949
I
0.918
Ciclev10023578m.g
Citrus clementina
Ciclev10023578m.g
I
0.918
POPTR_0015s03700
Populus trichocarpa
POPTR_0015s03700
I
0.918
Cla019261
Citrullus lanatus
Cla019261
N
0.917
SapurV1A.1146s0010
Salix purpurea
SapurV1A.1146s0010
I
0.914
SapurV1A.1381s0050
Salix purpurea
SapurV1A.1381s0050
I
0.913
SapurV1A.1381s0060
Salix purpurea
SapurV1A.1381s0060
I
0.913
Eucgr.B00724
Eucalyptus grandis
Eucgr.B00724
I
0.911
POPTR_0012s05280
Populus trichocarpa
POPTR_0012s05280
I
0.910
29974.m000235
Ricinus communis
29974.m000235
I
0.909
SapurV1A.0719s0060
Salix purpurea
SapurV1A.0719s0060
I
0.906
Cucsa.199090
Cucumis sativus
Cucsa.199090
N
0.905
Gorai.006G060900
Gossypium raimondii
Gorai.006G060900
I
0.903
Thhalv10021200m.g
Eutrema salsugineum
Thhalv10021200m.g
I
0.903
TCM_012350
Theobroma cacao
TCM_012350
I
0.902
evm.TU.supercontig_3.509
Carica papaya
evm.TU.supercontig_3.509
I
0.899
Bo01320s020
Brassica oleracea
Bo01320s020
I
0.898
anac058
Arabidopsis thaliana
AT3G18400
D
0.898
Aquca_026_00305
Aquilegia coerulea
Aquca_026_00305
I
0.898
anac058
Arabidopsis lyrata
Al_scaffold_0003_1942
I
0.898
Bra022319
Brassica rapa
Bra022319
I
0.898
Bo3g071500
Brassica oleracea
Bo3g071500
I
0.898
Bra001705
Brassica rapa
Bra001705
I
0.898
Bostr.19424s0822
Boechera stricta
Bostr.19424s0822
I
0.895
cassava2919.m1
Manihot esculenta
cassava2919.m1
I
0.893
Cagra.1681s0009
Capsella grandiflora
Cagra.1681s0009
I
0.892
anac058
Vitis vinifera
VIT_17s0000g03660
I
0.890
Bostr.26675s0262
Boechera stricta
Bostr.26675s0262
I
0.888
Bra037585
Brassica rapa
Bra037585
I
0.887
Bo1g117610
Brassica oleracea
Bo1g117610
I
0.887
OPUNC03G24220
Oryza punctata
OPUNC03G24220
I
0.884
Pavir.Ib03976
Panicum virgatum
Pavir.Ib03976
I
0.883
Eucgr.K02225
Eucalyptus grandis
Eucgr.K02225
I
0.883
mgf021065m
Mimulus guttatus
mgf021065m
I
0.882
Carubv10015990m.g
Capsella rubella
Carubv10015990m.g
I
0.882
Pavir.Ia01262
Panicum virgatum
Pavir.Ia01262
I
0.881
Si036535m.g
Setaria italica
Si036535m.g
I
0.880
GSMUA_Achr10G19900_001
Musa acuminata
GSMUA_Achr10G19900_001
I
0.880
GSMUA_Achr8G18420_001
Musa acuminata
GSMUA_Achr8G18420_001
I
0.878
Thhalv10013863m.g
Eutrema salsugineum
Thhalv10013863m.g
I
0.876
Bo9g113820
Brassica oleracea
Bo9g113820
I
0.876
AMTR_s00079p00099620
Amborella trichopoda
AMTR_s00079p00099620
I
0.875
Thhalv10011708m.g
Eutrema salsugineum
Thhalv10011708m.g
I
0.874
Sb01g014310
Sorghum bicolor
Sb01g014310
I
0.873
LPERR03G21900
Leersia perrieri
LPERR03G21900
I
0.872