CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene25163-v1.0-hybrid
(
Fragaria vesca
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
gene25163-v1.0-hybrid
T297990_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac058
M00886_2.00
Arabidopsis thaliana
CGTTGTCT
AGACAACG
PBM
Franco-Zorrilla et al.(2014)
ANAC58
0.898
0.877
anac058
M07210_2.00
Arabidopsis thaliana
CKTGHNNNRCAMGYWA
TWRCKTGYNNNDCAMG
Dap-seq
OMalley et al.(2016)
ANAC058_col_a
0.898
0.877
anac058
M07211_2.00
Arabidopsis thaliana
TDCKTGHNNNDCAMGHHA
TDDCKTGHNNNDCAMGHA
Dap-seq
OMalley et al.(2016)
ANAC058_colamp_a
0.898
0.877
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna25163.1-v1.0-hybrid
NAC/NAM
6
130
PPGFRFHPTDEELITYYLGRKVSDVSFTSQAVAVVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEILRQGVLVGMKKTLVFYKGRAPRGEKTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Fragaria vesca
TFs
55 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy