CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene31150-v1.0-hybrid
(
Fragaria vesca
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
gene31150-v1.0-hybrid
T298020_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC025
M02368_2.00
Arabidopsis thaliana
YACGYAAY
RTTRCGTR
PBM
Weirauch et al.(2014)
pTH7656
0.936
0.857
NAC018
M07176_2.00
Arabidopsis thaliana
DYACGBMAYYD
HRRTKVCGTRH
Dap-seq
OMalley et al.(2016)
NAM_colamp_a
0.918
0.821
NAC018
M07177_2.00
Arabidopsis thaliana
WDNCKWNHNNNWYACGBMA
TKVCGTRWNNNDNWMGNHW
Dap-seq
OMalley et al.(2016)
NAM_col_v3a
0.918
0.821
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna31150.1-v1.0-hybrid
NAC/NAM
19
150
PPGFRFHPTDEELVVHYLKKKASSAPLPVAIIAEVDLYKFDPWQLPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLSTTDEGGGGTRKVGVKKALVFYRGKPPKGIKTNWIMHEYRI
Links
Other
NAC/NAM
family TFs
Other
Fragaria vesca
TFs
381 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy