CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene34006-v1.0-hybrid
(
Fragaria vesca
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
gene34006-v1.0-hybrid
T298029_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna34006.1-v1.0-hybrid
NAC/NAM
9
152
PKGFRFQPSDDELLSHYLQKKNDREDPEITAIIPEIDVSKHEPRDLPALVFTRADFLDREWFTMPDSPDMEWYFFSPRVFKHSNSKSKSTKINRTTDEGYWKKQGNDRRITGACSDKQIGARRILTFYLSNKQKTDWVIHEFYL
Links
Other
NAC/NAM
family TFs
Other
Fragaria vesca
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene35013-v1.0-hybrid
Fragaria vesca
gene35013-v1.0-hybrid
N
0.992
gene35014-v1.0-hybrid
Fragaria vesca
gene35014-v1.0-hybrid
I
0.986
gene34004-v1.0-hybrid
Fragaria vesca
gene34004-v1.0-hybrid
N
0.981
gene18589-v1.0-hybrid
Fragaria vesca
gene18589-v1.0-hybrid
N
0.901
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.890
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.890
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.890
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.890
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.882
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.879
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.878
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.877
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.877
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.877
Si032702m.g
Setaria italica
Si032702m.g
I
0.877
OB09G25590
Oryza brachyantha
OB09G25590
I
0.877
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.877
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.877
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.877
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.877
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.877
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.877