CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.005G076200
(
Gossypium raimondii
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Gorai.005G076200
T298083_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac028
M01289_2.00
Arabidopsis thaliana
NTTGCGTRH
DYACGCAAN
PBM
Lambert et al.(2019)
pTH9962
0.888
0.693
anac028
M07179_2.00
Arabidopsis thaliana
CTTSHNNHDCAMGYWA
TWRCKTGHDNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC028_col_a
0.888
0.693
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.005G076200.1
NAC/NAM
21
147
PPGFRFHPTDEELVLYYLKRKICKKRLKLDIIRETDVYKRDPEELPGQSVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDRSITCNSRVVGIKKTLVFYRGRAPNGERTDWVMHEYTL
Gorai.005G076200.2
NAC/NAM
21
147
PPGFRFHPTDEELVLYYLKRKICKKRLKLDIIRETDVYKRDPEELPGQSVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDRSITCNSRVVGIKKTLVFYRGRAPNGERTDWVMHEYTL
Gorai.005G076200.3
NAC/NAM
21
147
PPGFRFHPTDEELVLYYLKRKICKKRLKLDIIRETDVYKRDPEELPGQSVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDRSITCNSRVVGIKKTLVFYRGRAPNGERTDWVMHEYTL
Gorai.005G076200.4
NAC/NAM
21
147
PPGFRFHPTDEELVLYYLKRKICKKRLKLDIIRETDVYKRDPEELPGQSVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDRSITCNSRVVGIKKTLVFYRGRAPNGERTDWVMHEYTL
Gorai.005G076200.5
NAC/NAM
21
147
PPGFRFHPTDEELVLYYLKRKICKKRLKLDIIRETDVYKRDPEELPGQSVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDRSITCNSRVVGIKKTLVFYRGRAPNGERTDWVMHEYTL
Gorai.005G076200.6
NAC/NAM
21
147
PPGFRFHPTDEELVLYYLKRKICKKRLKLDIIRETDVYKRDPEELPGQSVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDRSITCNSRVVGIKKTLVFYRGRAPNGERTDWVMHEYTL
Links
Other
NAC/NAM
family TFs
Other
Gossypium raimondii
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_26.135
Carica papaya
evm.TU.supercontig_26.135
I
0.946
Gorai.009G260000
Gossypium raimondii
Gorai.009G260000
I
0.943
Ciclev10000612m.g
Citrus clementina
Ciclev10000612m.g
I
0.943
TCM_036587
Theobroma cacao
TCM_036587
I
0.941
cassava22173.valid.m1
Manihot esculenta
cassava22173.valid.m1
I
0.939
POPTR_0002s06210
Populus trichocarpa
POPTR_0002s06210
I
0.938
SapurV1A.0134s0420
Salix purpurea
SapurV1A.0134s0420
I
0.937
POPTR_0005s22180
Populus trichocarpa
POPTR_0005s22180
I
0.933
Cla013854
Citrullus lanatus
Cla013854
I
0.929
VIT_18s0001g01820
Vitis vinifera
VIT_18s0001g01820
I
0.929
GLYMA10G36360
Glycine max
GLYMA10G36360
N
0.928
MDP0000852271
Malus domestica
MDP0000852271
I
0.926
gene27539-v1.0-hybrid
Fragaria vesca
gene27539-v1.0-hybrid
N
0.926
Pm022358
Prunus mume
Pm022358
N
0.925
PRUPE_ppa003410mg
Prunus persica
PRUPE_ppa003410mg
N
0.925
Lus10028713.g
Linum usitatissimum
Lus10028713.g
I
0.925
GLYMA20G31210
Glycine max
GLYMA20G31210
N
0.923
SapurV1A.0348s0040
Salix purpurea
SapurV1A.0348s0040
I
0.920
MDP0000169485
Malus domestica
MDP0000169485
I
0.919
MDP0000146969
Malus domestica
MDP0000146969
I
0.919
Cucsa.364130
Cucumis sativus
Cucsa.364130
N
0.917
Eucgr.F02771
Eucalyptus grandis
Eucgr.F02771
N
0.916
Ca_04337
Cicer arietinum
Ca_04337
N
0.911
MTR_1g097300
Medicago truncatula
MTR_1g097300
N
0.905
Cla016588
Citrullus lanatus
Cla016588
N
0.902
LjSGA_007769.1
Lotus japonicus
LjSGA_007769.1
N
0.899
cassava19069.valid.m1
Manihot esculenta
cassava19069.valid.m1
I
0.893
anac028
Arabidopsis thaliana
AT1G65910
D
0.888
anac028
Arabidopsis lyrata
Al_scaffold_0002_1137
I
0.888
Bostr.26959s0323
Boechera stricta
Bostr.26959s0323
I
0.886
Thhalv10018275m.g
Eutrema salsugineum
Thhalv10018275m.g
I
0.886
Cagra.11446s0003
Capsella grandiflora
Cagra.11446s0003
I
0.886
Carubv10021788m.g
Capsella rubella
Carubv10021788m.g
I
0.886
Bo2g052630
Brassica oleracea
Bo2g052630
I
0.886
Bra039745
Brassica rapa
Bra039745
I
0.886
Aquca_017_00010
Aquilegia coerulea
Aquca_017_00010
N
0.885
mg018130m
Mimulus guttatus
mg018130m
I
0.879
PGSC0003DMG400031149
Solanum tuberosum
PGSC0003DMG400031149
I
0.877
Solyc04g072220.2
Solanum lycopersicum
Solyc04g072220.2
I
0.875
ANAC13
Arabidopsis lyrata
fgenesh2_kg.1__3425__AT1G32870.2
I
0.871