CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.006G060900
(
Gossypium raimondii
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Gorai.006G060900
T298094_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac058
M00886_2.00
Arabidopsis thaliana
CGTTGTCT
AGACAACG
PBM
Franco-Zorrilla et al.(2014)
ANAC58
0.963
0.921
anac058
M07210_2.00
Arabidopsis thaliana
CKTGHNNNRCAMGYWA
TWRCKTGYNNNDCAMG
Dap-seq
OMalley et al.(2016)
ANAC058_col_a
0.963
0.921
anac058
M07211_2.00
Arabidopsis thaliana
TDCKTGHNNNDCAMGHHA
TDDCKTGHNNNDCAMGHA
Dap-seq
OMalley et al.(2016)
ANAC058_colamp_a
0.963
0.921
ANAC038
M07188_2.00
Arabidopsis thaliana
DNCKTRHNNHDCAMGYWA
TWRCKTGHDNNDYAMGNH
Dap-seq
OMalley et al.(2016)
ANAC038_col_a
0.898
0.789
ANAC038
M07189_2.00
Arabidopsis thaliana
TTDCTTGWNNHDYAMGHHAHH
DDTDDCKTRHDNNWCAAGHAA
Dap-seq
OMalley et al.(2016)
ANAC038_colamp_a
0.898
0.789
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.893
0.833
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.893
0.833
ANAC080
M02376_2.00
Arabidopsis lyrata
NBAMKNHWNN
NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH9230
0.880
0.807
NAC079
M02373_2.00
Arabidopsis thaliana
TTGCGTRY
RYACGCAA
PBM
Weirauch et al.(2014)
pTH7399
0.876
0.789
NAC079
M07228_2.00
Arabidopsis thaliana
CBWNHNNHACACGYWA
TWRCGTGTDNNDNWVG
Dap-seq
OMalley et al.(2016)
ANAC079_colamp_a
0.876
0.789
NAC079
M07229_2.00
Arabidopsis thaliana
NTWNCKTVHNNHWCAMGYWAH
DTWRCKTGWDNNDBAMGNWAN
Dap-seq
OMalley et al.(2016)
ANAC079_col
0.876
0.789
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.006G060900.1
NAC/NAM
5
130
PPGFRFHPTDEELITYYLSHKVSDITFTSKAIVDVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Gossypium raimondii
TFs
246 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy