CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G191800
(
Gossypium raimondii
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Gorai.013G191800
T298186_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC047
M07198_2.00
Arabidopsis thaliana
CACGB
VCGTG
Dap-seq
OMalley et al.(2016)
ANAC047_colamp_a
0.903
0.830
NAC047
M07199_2.00
Arabidopsis thaliana
WNNNWYACGYMWYYN
NRRWKRCGTRWNNNW
Dap-seq
OMalley et al.(2016)
ANAC047_col
0.903
0.830
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G191800.1
NAC/NAM
9
142
PPGFRFHPTDEELILHYLMKKLSSSPFPVSIIADVDIYKFDPWDLPDKAVFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKIIVASSMAAGRGGVFSNIGVKKALVFYKGRPPKGIKTNWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Gossypium raimondii
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0867s0160
Salix purpurea
SapurV1A.0867s0160
I
0.945
SapurV1A.1196s0040
Salix purpurea
SapurV1A.1196s0040
I
0.945
Lus10042531.g
Linum usitatissimum
Lus10042531.g
I
0.944
cassava22631.valid.m1
Manihot esculenta
cassava22631.valid.m1
I
0.942
TCM_026030
Theobroma cacao
TCM_026030
I
0.937
Ciclev10020717m.g
Citrus clementina
Ciclev10020717m.g
I
0.936
orange1.1g017665m.g
Citrus sinensis
orange1.1g017665m.g
I
0.936
SapurV1A.2115s0010
Salix purpurea
SapurV1A.2115s0010
I
0.936
SapurV1A.1058s0080
Salix purpurea
SapurV1A.1058s0080
I
0.936
cassava35701.valid.m1
Manihot esculenta
cassava35701.valid.m1
I
0.935
POPTR_0013s05080
Populus trichocarpa
POPTR_0013s05080
I
0.933
anac047
Vitis vinifera
VIT_08s0007g07670
I
0.930
Gorai.007G267900
Gossypium raimondii
Gorai.007G267900
I
0.928
29950.m001173
Ricinus communis
29950.m001173
I
0.925
POPTR_0019s04690
Populus trichocarpa
POPTR_0019s04690
I
0.922
Lus10003269.g
Linum usitatissimum
Lus10003269.g
I
0.921
Lus10006547.g
Linum usitatissimum
Lus10006547.g
I
0.920
Gorai.012G169300
Gossypium raimondii
Gorai.012G169300
N
0.918
anac047
Arabidopsis lyrata
fgenesh2_kg.3__367__AT3G04070.1
I
0.916
Bostr.2570s0301
Boechera stricta
Bostr.2570s0301
I
0.916
Cagra.2026s0001
Capsella grandiflora
Cagra.2026s0001
I
0.916
Carubv10014000m.g
Capsella rubella
Carubv10014000m.g
I
0.916
NAC047
Arabidopsis thaliana
AT3G04070
D
0.903
Thhalv10021011m.g
Eutrema salsugineum
Thhalv10021011m.g
I
0.896
mgf001766m
Mimulus guttatus
mgf001766m
I
0.895
OGLUM07G26640
Oryza glumaepatula
OGLUM07G26640
I
0.892
OBART07G26600
Oryza barthii
OBART07G26600
I
0.892
OGLUM07G26630
Oryza glumaepatula
OGLUM07G26630
I
0.892
OMERI07G23240
Oryza meridionalis
OMERI07G23240
I
0.892
ORUFI07G27590
Oryza rufipogon
ORUFI07G27590
I
0.892
ORGLA07G0209600
Oryza glaberrima
ORGLA07G0209600
I
0.892
BGIOSGA026407
Oryza indica
BGIOSGA026407
I
0.892
Bo1g152220
Brassica oleracea
Bo1g152220
I
0.891
Bra040152
Brassica rapa
Bra040152
I
0.891
Eucgr.K01471
Eucalyptus grandis
Eucgr.K01471
N
0.890
OLONG_012944
Oryza longistaminata
OLONG_012944
I
0.890
Pavir.J22666
Panicum virgatum
Pavir.J22666
I
0.887
Bo5g148420
Brassica oleracea
Bo5g148420
I
0.885
BRADI1G17480
Brachypodium distachyon
BRADI1G17480
I
0.884
Cucsa.341800
Cucumis sativus
Cucsa.341800
I
0.882
Bra031949
Brassica rapa
Bra031949
I
0.881
Bra026353
Brassica rapa
Bra026353
I
0.880
Bo1g048300
Brassica oleracea
Bo1g048300
I
0.880
RD26
Arabidopsis thaliana
AT4G27410
I
0.879
Cagra.0570s0027
Capsella grandiflora
Cagra.0570s0027
I
0.879
RD26
Arabidopsis lyrata
fgenesh2_kg.7__1491__AT4G27410.3
I
0.879
Bostr.7867s0562
Boechera stricta
Bostr.7867s0562
I
0.879
Carubv10005353m.g
Capsella rubella
Carubv10005353m.g
I
0.879
F775_02328
Aegilops tauschii
F775_02328
I
0.878
ONIVA07G26310
Oryza nivara
ONIVA07G26310
I
0.878
Traes_2BS_924D34AA1
Triticum aestivum
Traes_2BS_924D34AA1
I
0.877
Traes_2BS_C116E5668
Triticum aestivum
Traes_2BS_C116E5668
I
0.877
Thhalv10012308m.g
Eutrema salsugineum
Thhalv10012308m.g
I
0.877
Thhalv10025818m.g
Eutrema salsugineum
Thhalv10025818m.g
I
0.876
Bra019052
Brassica rapa
Bra019052
I
0.876
Bo7g111390
Brassica oleracea
Bo7g111390
I
0.876
LPERR03G13950
Leersia perrieri
LPERR03G13950
I
0.875
Cla023770
Citrullus lanatus
Cla023770
I
0.875
chr1.CM0104.240.nc
Lotus japonicus
chr1.CM0104.240.nc
I
0.873
PK06287.1
Cannabis sativa
PK06287.1
N
0.871
Si030267m.g
Setaria italica
Si030267m.g
I
0.871
Pavir.Bb03737
Panicum virgatum
Pavir.Bb03737
I
0.871