CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10009029.g
(
Linum usitatissimum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Lus10009029.g
T298230_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac058
M00886_2.00
Arabidopsis thaliana
CGTTGTCT
AGACAACG
PBM
Franco-Zorrilla et al.(2014)
ANAC58
0.927
0.851
anac058
M07210_2.00
Arabidopsis thaliana
CKTGHNNNRCAMGYWA
TWRCKTGYNNNDCAMG
Dap-seq
OMalley et al.(2016)
ANAC058_col_a
0.927
0.851
anac058
M07211_2.00
Arabidopsis thaliana
TDCKTGHNNNDCAMGHHA
TDDCKTGHNNNDCAMGHA
Dap-seq
OMalley et al.(2016)
ANAC058_colamp_a
0.927
0.851
ANAC038
M07188_2.00
Arabidopsis thaliana
DNCKTRHNNHDCAMGYWA
TWRCKTGHDNNDYAMGNH
Dap-seq
OMalley et al.(2016)
ANAC038_col_a
0.885
0.789
ANAC038
M07189_2.00
Arabidopsis thaliana
TTDCTTGWNNHDYAMGHHAHH
DDTDDCKTRHDNNWCAAGHAA
Dap-seq
OMalley et al.(2016)
ANAC038_colamp_a
0.885
0.789
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.877
0.798
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.877
0.798
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10009029
NAC/NAM
6
132
PPGFRFHPTDDELISSYLTRKVSDTSFACKAIVDADLNKNEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFSATTGTLVGMKKTLVFYKGRAPRGEKSNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Linum usitatissimum
TFs
174 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10009669.g
Linum usitatissimum
Lus10009669.g
I
0.972
SapurV1A.1381s0050
Salix purpurea
SapurV1A.1381s0050
I
0.946
SapurV1A.1381s0060
Salix purpurea
SapurV1A.1381s0060
I
0.946
POPTR_0012s05280
Populus trichocarpa
POPTR_0012s05280
I
0.944
cassava9086.m1
Manihot esculenta
cassava9086.m1
I
0.941
Ciclev10023578m.g
Citrus clementina
Ciclev10023578m.g
I
0.940
cassava2919.m1
Manihot esculenta
cassava2919.m1
I
0.940
Bra001705
Brassica rapa
Bra001705
I
0.939
Bra022319
Brassica rapa
Bra022319
I
0.939
POPTR_0015s03700
Populus trichocarpa
POPTR_0015s03700
I
0.939
Bo3g071500
Brassica oleracea
Bo3g071500
I
0.939
Bo01320s020
Brassica oleracea
Bo01320s020
I
0.939
SapurV1A.1146s0010
Salix purpurea
SapurV1A.1146s0010
I
0.937
evm.TU.supercontig_3.509
Carica papaya
evm.TU.supercontig_3.509
I
0.935
Cagra.1681s0009
Capsella grandiflora
Cagra.1681s0009
I
0.935
Lus10027227.g
Linum usitatissimum
Lus10027227.g
I
0.935
MDP0000153949
Malus domestica
MDP0000153949
I
0.934
MDP0000246482
Malus domestica
MDP0000246482
I
0.934
Bostr.26675s0262
Boechera stricta
Bostr.26675s0262
I
0.933
29974.m000235
Ricinus communis
29974.m000235
I
0.933
Carubv10015990m.g
Capsella rubella
Carubv10015990m.g
I
0.933
AMTR_s00025p00174590
Amborella trichopoda
AMTR_s00025p00174590
I
0.932
SapurV1A.0719s0060
Salix purpurea
SapurV1A.0719s0060
I
0.931
Thhalv10021200m.g
Eutrema salsugineum
Thhalv10021200m.g
I
0.931
Thhalv10011708m.g
Eutrema salsugineum
Thhalv10011708m.g
I
0.929
Gorai.006G060900
Gossypium raimondii
Gorai.006G060900
I
0.928
Lus10038937.g
Linum usitatissimum
Lus10038937.g
I
0.928
Bostr.19424s0822
Boechera stricta
Bostr.19424s0822
I
0.928
Eucgr.B00724
Eucalyptus grandis
Eucgr.B00724
I
0.927
anac058
Arabidopsis lyrata
Al_scaffold_0003_1942
I
0.927
TCM_012350
Theobroma cacao
TCM_012350
I
0.927
Eucgr.K02225
Eucalyptus grandis
Eucgr.K02225
I
0.927
anac058
Arabidopsis thaliana
AT3G18400
D
0.927
LPERR03G21900
Leersia perrieri
LPERR03G21900
I
0.926
ORGLA03G0246300
Oryza glaberrima
ORGLA03G0246300
I
0.925
OS03G0624600
Oryza sativa
OS03G0624600
I
0.925
anac058
Vitis vinifera
VIT_17s0000g03660
I
0.925
OMERI03G23890
Oryza meridionalis
OMERI03G23890
I
0.925
OGLUM03G27330
Oryza glumaepatula
OGLUM03G27330
I
0.925
ONIVA03G27500
Oryza nivara
ONIVA03G27500
I
0.925
ORUFI03G27440
Oryza rufipogon
ORUFI03G27440
I
0.925
OBART03G26480
Oryza barthii
OBART03G26480
I
0.925
AMTR_s00079p00099620
Amborella trichopoda
AMTR_s00079p00099620
I
0.925
BGIOSGA013151
Oryza indica
BGIOSGA013151
I
0.925
Aquca_026_00305
Aquilegia coerulea
Aquca_026_00305
I
0.924
Bo1g117610
Brassica oleracea
Bo1g117610
I
0.921
SapurV1A.0263s0310
Salix purpurea
SapurV1A.0263s0310
I
0.921
Bra037585
Brassica rapa
Bra037585
I
0.921
mgf021065m
Mimulus guttatus
mgf021065m
I
0.920
Bra003023
Brassica rapa
Bra003023
I
0.919
SapurV1A.1285s0100
Salix purpurea
SapurV1A.1285s0100
I
0.919
POPTR_0018s03910
Populus trichocarpa
POPTR_0018s03910
I
0.919
SapurV1A.1363s0020
Salix purpurea
SapurV1A.1363s0020
I
0.919
Pavir.Ib03976
Panicum virgatum
Pavir.Ib03976
I
0.919
POPTR_0006s29180
Populus trichocarpa
POPTR_0006s29180
I
0.918
MTR_3g109340
Medicago truncatula
MTR_3g109340
I
0.917
Si036535m.g
Setaria italica
Si036535m.g
I
0.917
Pavir.Ia01262
Panicum virgatum
Pavir.Ia01262
I
0.917
OPUNC03G24220
Oryza punctata
OPUNC03G24220
I
0.915
chr1.LjT35C22.60.nc
Lotus japonicus
chr1.LjT35C22.60.nc
I
0.915
GSMUA_Achr10G19900_001
Musa acuminata
GSMUA_Achr10G19900_001
I
0.915
gene26043-v1.0-hybrid
Fragaria vesca
gene26043-v1.0-hybrid
I
0.915
F775_05949
Aegilops tauschii
F775_05949
I
0.913
Traes_4AL_B44DF4ACC
Triticum aestivum
Traes_4AL_B44DF4ACC
I
0.913
TRIUR3_27612
Triticum urartu
TRIUR3_27612
I
0.913
28226.m000851
Ricinus communis
28226.m000851
I
0.912
Sb01g014310
Sorghum bicolor
Sb01g014310
I
0.912
MLOC_68284
Hordeum vulgare
MLOC_68284
I
0.912
evm.TU.supercontig_244.7
Carica papaya
evm.TU.supercontig_244.7
I
0.912
orange1.1g017827m.g
Citrus sinensis
orange1.1g017827m.g
I
0.911
Traes_4BS_373BDBA94
Triticum aestivum
Traes_4BS_373BDBA94
I
0.911
Lus10001648.g
Linum usitatissimum
Lus10001648.g
I
0.911
Ciclev10020480m.g
Citrus clementina
Ciclev10020480m.g
I
0.911
BRADI1G14467
Brachypodium distachyon
BRADI1G14467
I
0.911
Lus10021659.g
Linum usitatissimum
Lus10021659.g
I
0.911
gene08765-v1.0-hybrid
Fragaria vesca
gene08765-v1.0-hybrid
I
0.910
GLYMA14G20276
Glycine max
GLYMA14G20276
I
0.909
Gorai.010G124100
Gossypium raimondii
Gorai.010G124100
I
0.908
Eucgr.C02105
Eucalyptus grandis
Eucgr.C02105
I
0.908
orange1.1g037591m.g
Citrus sinensis
orange1.1g037591m.g
I
0.908
Ciclev10008885m.g
Citrus clementina
Ciclev10008885m.g
I
0.908
cassava18338.valid.m1
Manihot esculenta
cassava18338.valid.m1
I
0.908
TCM_036791
Theobroma cacao
TCM_036791
I
0.908
PGSC0003DMG400028779
Solanum tuberosum
PGSC0003DMG400028779
I
0.908
Lus10026966.g
Linum usitatissimum
Lus10026966.g
I
0.907
GSMUA_Achr8G18420_001
Musa acuminata
GSMUA_Achr8G18420_001
I
0.906
ANAC039
Vitis vinifera
VIT_04s0008g02710
I
0.906
GSMUA_Achr7G19680_001
Musa acuminata
GSMUA_Achr7G19680_001
I
0.906
Lus10020165.g
Linum usitatissimum
Lus10020165.g
I
0.905
OB03G34470
Oryza brachyantha
OB03G34470
I
0.905
PGSC0003DMG400005384
Solanum tuberosum
PGSC0003DMG400005384
I
0.905
GLYMA06G08440
Glycine max
GLYMA06G08440
I
0.904
mgf025158m
Mimulus guttatus
mgf025158m
I
0.904
GLYMA04G08320
Glycine max
GLYMA04G08320
I
0.903
MTR_4g108760
Medicago truncatula
MTR_4g108760
I
0.903
Aquca_018_00116
Aquilegia coerulea
Aquca_018_00116
I
0.902
PK02366.1
Cannabis sativa
PK02366.1
I
0.901
Cucsa.161510
Cucumis sativus
Cucsa.161510
I
0.901
Cla022572
Citrullus lanatus
Cla022572
I
0.901
Solyc12g036480.1
Solanum lycopersicum
Solyc12g036480.1
I
0.899
SapurV1A.0377s0130
Salix purpurea
SapurV1A.0377s0130
I
0.899
POPTR_0012s01610
Populus trichocarpa
POPTR_0012s01610
I
0.899
SapurV1A.0346s0160
Salix purpurea
SapurV1A.0346s0160
I
0.898
30138.m004055
Ricinus communis
30138.m004055
I
0.898
Pm005091
Prunus mume
Pm005091
I
0.898
PRUPE_ppa025916mg
Prunus persica
PRUPE_ppa025916mg
I
0.898
MDP0000690168
Malus domestica
MDP0000690168
I
0.898
cassava17517.valid.m1
Manihot esculenta
cassava17517.valid.m1
I
0.898
MDP0000232008
Malus domestica
MDP0000232008
I
0.897
Cla019391
Citrullus lanatus
Cla019391
I
0.895
Cucsa.197830
Cucumis sativus
Cucsa.197830
I
0.895
PGSC0003DMG400033047
Solanum tuberosum
PGSC0003DMG400033047
I
0.894
Solyc06g069710.2
Solanum lycopersicum
Solyc06g069710.2
I
0.894
Solyc06g069100.1
Solanum lycopersicum
Solyc06g069100.1
I
0.893
POPTR_0015s02170
Populus trichocarpa
POPTR_0015s02170
I
0.893
PGSC0003DMG400014845
Solanum tuberosum
PGSC0003DMG400014845
I
0.889
Ca_11021
Cicer arietinum
Ca_11021
I
0.888
Thhalv10000520m.g
Eutrema salsugineum
Thhalv10000520m.g
I
0.887
PRUPE_ppa007653mg
Prunus persica
PRUPE_ppa007653mg
I
0.887
Solyc08g006020.2
Solanum lycopersicum
Solyc08g006020.2
I
0.886
Bo8g099810
Brassica oleracea
Bo8g099810
I
0.885
Bra032095
Brassica rapa
Bra032095
I
0.885
Cagra.4091s0015
Capsella grandiflora
Cagra.4091s0015
I
0.885
Bra007855
Brassica rapa
Bra007855
I
0.885
Gorai.007G323900
Gossypium raimondii
Gorai.007G323900
I
0.885
Bostr.27895s0039
Boechera stricta
Bostr.27895s0039
I
0.885
PK13860.1
Cannabis sativa
PK13860.1
I
0.885
Carubv10025508m.g
Capsella rubella
Carubv10025508m.g
I
0.885
PGSC0003DMG400019523
Solanum tuberosum
PGSC0003DMG400019523
I
0.885
ANAC038
Arabidopsis thaliana
AT2G24430
D
0.885
ANAC039
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_4000352
I
0.885
Bra022685
Brassica rapa
Bra022685
I
0.884
Bo2g043280
Brassica oleracea
Bo2g043280
I
0.884
Thhalv10013863m.g
Eutrema salsugineum
Thhalv10013863m.g
I
0.882
Bo9g113820
Brassica oleracea
Bo9g113820
I
0.882
Solyc03g115850.2
Solanum lycopersicum
Solyc03g115850.2
I
0.881
GRMZM2G386163
Zea mays
GRMZM2G386163
I
0.881
AMTR_s00010p00266320
Amborella trichopoda
AMTR_s00010p00266320
I
0.880
mgf021404m
Mimulus guttatus
mgf021404m
I
0.879
Pm024887
Prunus mume
Pm024887
I
0.879
Solyc07g062840.2
Solanum lycopersicum
Solyc07g062840.2
I
0.878
MDP0000911724
Malus domestica
MDP0000911724
I
0.878
chr3.CM0282.730.nc
Lotus japonicus
chr3.CM0282.730.nc
I
0.878
SapurV1A.2059s0010
Salix purpurea
SapurV1A.2059s0010
I
0.877
NAC098
Arabidopsis thaliana
AT5G53950
D
0.877
Pavir.J02772
Panicum virgatum
Pavir.J02772
I
0.877
SapurV1A.1325s0010
Salix purpurea
SapurV1A.1325s0010
I
0.877
CUC2
Arabidopsis lyrata
Al_scaffold_0008_1815
I
0.877
BGIOSGA029508
Oryza indica
BGIOSGA029508
I
0.877
ORUFI09G16430
Oryza rufipogon
ORUFI09G16430
I
0.877
PGSC0003DMG400029593
Solanum tuberosum
PGSC0003DMG400029593
I
0.877
Cagra.4622s0005
Capsella grandiflora
Cagra.4622s0005
I
0.877
Carubv10028330m.g
Capsella rubella
Carubv10028330m.g
I
0.877
Bostr.26833s0880
Boechera stricta
Bostr.26833s0880
I
0.877
POPTR_0011s11600
Populus trichocarpa
POPTR_0011s11600
I
0.877
Si030187m.g
Setaria italica
Si030187m.g
I
0.877
Sb02g028870
Sorghum bicolor
Sb02g028870
I
0.877
cassava46147.m1
Manihot esculenta
cassava46147.m1
I
0.877
ORGLA09G0117400
Oryza glaberrima
ORGLA09G0117400
I
0.877
OS09G0497900
Oryza sativa
OS09G0497900
I
0.877
OGLUM09G15820
Oryza glumaepatula
OGLUM09G15820
I
0.877
OBART09G15220
Oryza barthii
OBART09G15220
I
0.877
LPERR09G11330
Leersia perrieri
LPERR09G11330
I
0.877
OLONG_009674
Oryza longistaminata
OLONG_009674
I
0.877
OMERI07G04410
Oryza meridionalis
OMERI07G04410
I
0.877
ONIVA09G15800
Oryza nivara
ONIVA09G15800
I
0.877
OPUNC09G13640
Oryza punctata
OPUNC09G13640
I
0.877
Solyc08g074300.2
Solanum lycopersicum
Solyc08g074300.2
I
0.875
SELMODRAFT_71303
Selaginella moellendorffii
SELMODRAFT_71303
I
0.874
GLYMA06G21020
Glycine max
GLYMA06G21020
I
0.874
SELMODRAFT_67245
Selaginella moellendorffii
SELMODRAFT_67245
I
0.874
Eucgr.B00529
Eucalyptus grandis
Eucgr.B00529
I
0.874
Aquca_033_00035
Aquilegia coerulea
Aquca_033_00035
I
0.874
gene00971-v1.0-hybrid
Fragaria vesca
gene00971-v1.0-hybrid
I
0.873