CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10030978.g
(
Linum usitatissimum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Lus10030978.g
T298318_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac071
M07219_2.00
Arabidopsis thaliana
CTTSHNNYHCAMGYW
WRCKTGDRNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC071_col_a
0.929
0.815
anac071
M07220_2.00
Arabidopsis thaliana
CTTSHNNNNSAMGYA
TRCKTSNNNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC071_colamp_a
0.929
0.815
anac096
M07237_2.00
Arabidopsis thaliana
CTTSHNNNNBAMGHAAYC
GRTTDCKTVNNNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC096_colamp_a
0.927
0.759
anac096
M07238_2.00
Arabidopsis thaliana
TTNCTTSWNNHNYAMG
CKTRNDNNWSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC096_col
0.927
0.759
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10030978
NAC/NAM
7
135
PPGFRFHPTDEELVGYYLHRKVHGLEIELEVVPVVDLYKFDPWELPEKSFLPRRDMEWFFFCPRDRKYPNGSRTNRATRAGYWKATGKDRKIVCRSPGGLTGYRKTLVFYRGRAPLGDRMDWVMHEYRF
Links
Other
NAC/NAM
family TFs
Other
Linum usitatissimum
TFs
91 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10035373.g
Linum usitatissimum
Lus10035373.g
I
0.966
29827.m002555
Ricinus communis
29827.m002555
I
0.965
SapurV1A.0846s0080
Salix purpurea
SapurV1A.0846s0080
I
0.963
cassava22941.valid.m1
Manihot esculenta
cassava22941.valid.m1
I
0.963
POPTR_0003s08830
Populus trichocarpa
POPTR_0003s08830
I
0.963
gene10722-v1.0-hybrid
Fragaria vesca
gene10722-v1.0-hybrid
I
0.962
MDP0000936269
Malus domestica
MDP0000936269
I
0.962
orange1.1g018835m.g
Citrus sinensis
orange1.1g018835m.g
I
0.961
Cucsa.313350
Cucumis sativus
Cucsa.313350
I
0.961
Ciclev10031966m.g
Citrus clementina
Ciclev10031966m.g
I
0.961
Cla016424
Citrullus lanatus
Cla016424
I
0.961
PRUPE_ppa007828mg
Prunus persica
PRUPE_ppa007828mg
I
0.959
Pm023277
Prunus mume
Pm023277
I
0.959
PK00339.1
Cannabis sativa
PK00339.1
I
0.959
SapurV1A.0900s0060
Salix purpurea
SapurV1A.0900s0060
I
0.958
POPTR_0001s02710
Populus trichocarpa
POPTR_0001s02710
I
0.956
GLYMA05G23840
Glycine max
GLYMA05G23840
I
0.955
MTR_5g014300
Medicago truncatula
MTR_5g014300
I
0.955
GLYMA17G16500
Glycine max
GLYMA17G16500
I
0.953
Gorai.004G186700
Gossypium raimondii
Gorai.004G186700
I
0.953
VIT_02s0012g01040
Vitis vinifera
VIT_02s0012g01040
I
0.952
Eucgr.D02182
Eucalyptus grandis
Eucgr.D02182
I
0.952
Gorai.008G227800
Gossypium raimondii
Gorai.008G227800
I
0.951
evm.TU.supercontig_90.52
Carica papaya
evm.TU.supercontig_90.52
I
0.951
Solyc08g077110.2
Solanum lycopersicum
Solyc08g077110.2
I
0.949
Eucgr.E00298
Eucalyptus grandis
Eucgr.E00298
I
0.946
Ca_12837
Cicer arietinum
Ca_12837
I
0.946
PGSC0003DMG400017505
Solanum tuberosum
PGSC0003DMG400017505
I
0.944
Cagra.3356s0092
Capsella grandiflora
Cagra.3356s0092
I
0.943
Bo7g075540
Brassica oleracea
Bo7g075540
I
0.943
Thhalv10001200m.g
Eutrema salsugineum
Thhalv10001200m.g
I
0.943
Bra025012
Brassica rapa
Bra025012
I
0.943
anac096
Arabidopsis lyrata
fgenesh2_kg.8__135__AT5G46590.1
I
0.942
OB10G26350
Oryza brachyantha
OB10G26350
I
0.942
Bra022046
Brassica rapa
Bra022046
I
0.941
Carubv10028284m.g
Capsella rubella
Carubv10028284m.g
I
0.940
OLONG_018722
Oryza longistaminata
OLONG_018722
I
0.940
Cagra.0569s0030
Capsella grandiflora
Cagra.0569s0030
I
0.940
OGLUM10G19330
Oryza glumaepatula
OGLUM10G19330
I
0.940
BGIOSGA033482
Oryza indica
BGIOSGA033482
I
0.940
ORUFI10G20470
Oryza rufipogon
ORUFI10G20470
I
0.940
OMERI07G08100
Oryza meridionalis
OMERI07G08100
I
0.940
OBART10G19230
Oryza barthii
OBART10G19230
I
0.940
OPUNC10G17630
Oryza punctata
OPUNC10G17630
I
0.940
ORGLA10G0144100
Oryza glaberrima
ORGLA10G0144100
I
0.940
ONIVA10G21790
Oryza nivara
ONIVA10G21790
I
0.940
BRADI3G33957
Brachypodium distachyon
BRADI3G33957
I
0.939
Bostr.30275s0267
Boechera stricta
Bostr.30275s0267
I
0.938
LPERR10G15090
Leersia perrieri
LPERR10G15090
I
0.938
TCM_015749
Theobroma cacao
TCM_015749
I
0.938
Ca_02274
Cicer arietinum
Ca_02274
I
0.937
Gorai.007G031300
Gossypium raimondii
Gorai.007G031300
I
0.936
anac071
Arabidopsis lyrata
Al_scaffold_0007_2395
I
0.936
GSMUA_Achr5G03360_001
Musa acuminata
GSMUA_Achr5G03360_001
I
0.936
Si036301m.g
Setaria italica
Si036301m.g
I
0.933
Sb01g028450
Sorghum bicolor
Sb01g028450
I
0.933
Bo2g130240
Brassica oleracea
Bo2g130240
I
0.933
Pavir.Ia03491
Panicum virgatum
Pavir.Ia03491
I
0.932
Bra013272
Brassica rapa
Bra013272
I
0.931
Carubv10007390m.g
Capsella rubella
Carubv10007390m.g
I
0.931
Bo1g019130
Brassica oleracea
Bo1g019130
I
0.931
Gorai.003G180600
Gossypium raimondii
Gorai.003G180600
I
0.930
Traes_1AL_D6C49C3BC
Triticum aestivum
Traes_1AL_D6C49C3BC
I
0.930
MLOC_58950
Hordeum vulgare
MLOC_58950
I
0.930
F775_28577
Aegilops tauschii
F775_28577
I
0.930
Bo7g105630
Brassica oleracea
Bo7g105630
I
0.930
Traes_1BL_8925B27BC
Triticum aestivum
Traes_1BL_8925B27BC
I
0.930
GRMZM2G082709
Zea mays
GRMZM2G082709
I
0.930
anac071
Arabidopsis thaliana
AT4G17980
D
0.929
Bra012626
Brassica rapa
Bra012626
I
0.927
anac096
Arabidopsis thaliana
AT5G46590
D
0.927
Pavir.Ib02435
Panicum virgatum
Pavir.Ib02435
I
0.923
AMTR_s00149p00068500
Amborella trichopoda
AMTR_s00149p00068500
I
0.921
TRIUR3_22131
Triticum urartu
TRIUR3_22131
I
0.918
chr2.CM0021.650.nc
Lotus japonicus
chr2.CM0021.650.nc
I
0.915
Solyc06g061080.2
Solanum lycopersicum
Solyc06g061080.2
I
0.914
MDP0000119446
Malus domestica
MDP0000119446
I
0.911
MTR_4g098630
Medicago truncatula
MTR_4g098630
I
0.911
mgf019012m
Mimulus guttatus
mgf019012m
I
0.901
Aquca_044_00122
Aquilegia coerulea
Aquca_044_00122
I
0.900
GSMUA_Achr11G17780_001
Musa acuminata
GSMUA_Achr11G17780_001
I
0.898
Bostr.4485s0006
Boechera stricta
Bostr.4485s0006
I
0.895
Thhalv10027064m.g
Eutrema salsugineum
Thhalv10027064m.g
I
0.894
Thhalv10018275m.g
Eutrema salsugineum
Thhalv10018275m.g
I
0.878
Bra039745
Brassica rapa
Bra039745
I
0.878
Carubv10021788m.g
Capsella rubella
Carubv10021788m.g
I
0.878
Bo2g052630
Brassica oleracea
Bo2g052630
I
0.878
Cagra.11446s0003
Capsella grandiflora
Cagra.11446s0003
I
0.878
Bostr.26959s0323
Boechera stricta
Bostr.26959s0323
I
0.878
PDK_20s1433691g002
Phoenix dactylifera
PDK_20s1433691g002
I
0.873
Traes_1DL_A556D8590
Triticum aestivum
Traes_1DL_A556D8590
N
0.872