CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000285555
(
Malus domestica
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
MDP0000285555
T298512_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC101
M07241_2.00
Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA
Dap-seq
OMalley et al.(2016)
VND6_colamp_a
0.917
0.368
NAC101
M07242_2.00
Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND6_col_v31
0.917
0.368
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000285555
NAC/NAM
8
141
PVGYKFHPRDEELVGYYMRNKVRGAPFKDENVIPDNDLYGSMEARDIWKNNGGQTLRKGEDLYFFTKLKPTSSKGTGSRVARTIGSGTWHGQNSGTKVKDPKTKETIGWWKRFTYANTKYLQKNGYWIMHEFSL
Links
Other
NAC/NAM
family TFs
Other
Malus domestica
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000206868
Malus domestica
MDP0000206868
I
0.986
MDP0000882033
Malus domestica
MDP0000882033
N
0.978
PRUPE_ppa015761mg
Prunus persica
PRUPE_ppa015761mg
N
0.965
PRUPE_ppa019675mg
Prunus persica
PRUPE_ppa019675mg
N
0.950
PRUPE_ppa027019mg
Prunus persica
PRUPE_ppa027019mg
N
0.950
Pm011994
Prunus mume
Pm011994
N
0.949
Pm012091
Prunus mume
Pm012091
N
0.948
Pm001409
Prunus mume
Pm001409
N
0.946
PRUPE_ppa025596mg
Prunus persica
PRUPE_ppa025596mg
N
0.939
PRUPE_ppa023804mg
Prunus persica
PRUPE_ppa023804mg
N
0.939
Pm028250
Prunus mume
Pm028250
N
0.938
PRUPE_ppa025721mg
Prunus persica
PRUPE_ppa025721mg
N
0.927
Pm031134
Prunus mume
Pm031134
N
0.925
Pm013492
Prunus mume
Pm013492
N
0.923
VND6
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001814
I
0.917
NAC101
Arabidopsis thaliana
AT5G62380
D
0.917
Bostr.0568s0569
Boechera stricta
Bostr.0568s0569
I
0.917
Cagra.4003s0027
Capsella grandiflora
Cagra.4003s0027
I
0.917
Carubv10026697m.g
Capsella rubella
Carubv10026697m.g
I
0.917
MDP0000911336
Malus domestica
MDP0000911336
N
0.915
MDP0000772731
Malus domestica
MDP0000772731
N
0.915
Pm003866
Prunus mume
Pm003866
N
0.915
Bo9g014940
Brassica oleracea
Bo9g014940
I
0.915
Bra035896
Brassica rapa
Bra035896
I
0.914
Bo3g107700
Brassica oleracea
Bo3g107700
I
0.911
Bra029266
Brassica rapa
Bra029266
I
0.911
Bo2g164090
Brassica oleracea
Bo2g164090
I
0.911
Thhalv10004488m.g
Eutrema salsugineum
Thhalv10004488m.g
I
0.911
Bra010077
Brassica rapa
Bra010077
I
0.910
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.877
GLYMA05G32590
Glycine max
GLYMA05G32590
I
0.876
Cla011742
Citrullus lanatus
Cla011742
I
0.875