CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g017665m.g
(
Citrus sinensis
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
orange1.1g017665m.g
T298652_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC047
M07198_2.00
Arabidopsis thaliana
CACGB
VCGTG
Dap-seq
OMalley et al.(2016)
ANAC047_colamp_a
0.922
0.848
NAC047
M07199_2.00
Arabidopsis thaliana
WNNNWYACGYMWYYN
NRRWKRCGTRWNNNW
Dap-seq
OMalley et al.(2016)
ANAC047_col
0.922
0.848
NAC018
M07176_2.00
Arabidopsis thaliana
DYACGBMAYYD
HRRTKVCGTRH
Dap-seq
OMalley et al.(2016)
NAM_colamp_a
0.879
0.759
NAC018
M07177_2.00
Arabidopsis thaliana
WDNCKWNHNNNWYACGBMA
TKVCGTRWNNNDNWMGNHW
Dap-seq
OMalley et al.(2016)
NAM_col_v3a
0.879
0.759
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g017665m
NAC/NAM
12
141
PPGFRFHPTDEELILHYLKKKVASMPFPVSIIADVDIYKFDPWDLPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKIILATSVGAHQENIGVKKALVFYKGRPPKGVKTNWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Citrus sinensis
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10020717m.g
Citrus clementina
Ciclev10020717m.g
I
0.965
SapurV1A.1058s0080
Salix purpurea
SapurV1A.1058s0080
I
0.954
SapurV1A.2115s0010
Salix purpurea
SapurV1A.2115s0010
I
0.954
cassava35701.valid.m1
Manihot esculenta
cassava35701.valid.m1
I
0.953
POPTR_0019s04690
Populus trichocarpa
POPTR_0019s04690
I
0.950
29950.m001173
Ricinus communis
29950.m001173
I
0.947
cassava22631.valid.m1
Manihot esculenta
cassava22631.valid.m1
I
0.942
POPTR_0013s05080
Populus trichocarpa
POPTR_0013s05080
I
0.941
TCM_026030
Theobroma cacao
TCM_026030
I
0.941
Lus10042531.g
Linum usitatissimum
Lus10042531.g
I
0.936
Gorai.013G191800
Gossypium raimondii
Gorai.013G191800
I
0.936
Gorai.007G267900
Gossypium raimondii
Gorai.007G267900
I
0.934
SapurV1A.0867s0160
Salix purpurea
SapurV1A.0867s0160
I
0.932
SapurV1A.1196s0040
Salix purpurea
SapurV1A.1196s0040
I
0.932
anac047
Arabidopsis lyrata
fgenesh2_kg.3__367__AT3G04070.1
I
0.929
Cagra.2026s0001
Capsella grandiflora
Cagra.2026s0001
I
0.929
Carubv10014000m.g
Capsella rubella
Carubv10014000m.g
I
0.929
Bostr.2570s0301
Boechera stricta
Bostr.2570s0301
I
0.929
Lus10006547.g
Linum usitatissimum
Lus10006547.g
I
0.927
Bra040152
Brassica rapa
Bra040152
I
0.926
Bo1g152220
Brassica oleracea
Bo1g152220
I
0.926
anac047
Vitis vinifera
VIT_08s0007g07670
I
0.924
Lus10003269.g
Linum usitatissimum
Lus10003269.g
I
0.923
NAC047
Arabidopsis thaliana
AT3G04070
D
0.922
Bo5g148420
Brassica oleracea
Bo5g148420
I
0.918
Bra031949
Brassica rapa
Bra031949
I
0.918
Thhalv10021011m.g
Eutrema salsugineum
Thhalv10021011m.g
I
0.916
GLYMA16G26740
Glycine max
GLYMA16G26740
I
0.906
Eucgr.A02070
Eucalyptus grandis
Eucgr.A02070
I
0.903
Pm025312
Prunus mume
Pm025312
I
0.901
PRUPE_ppa007445mg
Prunus persica
PRUPE_ppa007445mg
I
0.901
MDP0000180683
Malus domestica
MDP0000180683
I
0.901
Sb01g036560
Sorghum bicolor
Sb01g036560
I
0.894
MDP0000404409
Malus domestica
MDP0000404409
I
0.893
GLYMA19G28476
Glycine max
GLYMA19G28476
I
0.893
GLYMA16G04740
Glycine max
GLYMA16G04740
I
0.891
Lus10018469.g
Linum usitatissimum
Lus10018469.g
I
0.889
Lus10011215.g
Linum usitatissimum
Lus10011215.g
I
0.889
OPUNC07G25060
Oryza punctata
OPUNC07G25060
I
0.889
30078.m002348
Ricinus communis
30078.m002348
I
0.887
Carubv10009524m.g
Capsella rubella
Carubv10009524m.g
I
0.885
Cagra.0946s0024
Capsella grandiflora
Cagra.0946s0024
I
0.885
GLYMA12G22790
Glycine max
GLYMA12G22790
I
0.885
Eucgr.K01471
Eucalyptus grandis
Eucgr.K01471
N
0.885
LPERR03G13950
Leersia perrieri
LPERR03G13950
I
0.885
GLYMA02G07700
Glycine max
GLYMA02G07700
I
0.884
Bra026353
Brassica rapa
Bra026353
I
0.883
mgf001766m
Mimulus guttatus
mgf001766m
I
0.883
Bo1g048300
Brassica oleracea
Bo1g048300
I
0.883
chr1.CM0104.240.nc
Lotus japonicus
chr1.CM0104.240.nc
I
0.883
Bostr.7867s0562
Boechera stricta
Bostr.7867s0562
I
0.882
Cagra.0570s0027
Capsella grandiflora
Cagra.0570s0027
I
0.882
RD26
Arabidopsis thaliana
AT4G27410
I
0.882
Carubv10005353m.g
Capsella rubella
Carubv10005353m.g
I
0.882
RD26
Arabidopsis lyrata
fgenesh2_kg.7__1491__AT4G27410.3
I
0.882
GRMZM2G042494
Zea mays
GRMZM2G042494
I
0.880
F775_02308
Aegilops tauschii
F775_02308
I
0.879
Thhalv10025818m.g
Eutrema salsugineum
Thhalv10025818m.g
I
0.879
Bra019052
Brassica rapa
Bra019052
I
0.879
Bra021114
Brassica rapa
Bra021114
I
0.879
Cucsa.341800
Cucumis sativus
Cucsa.341800
I
0.879
TRIUR3_29857
Triticum urartu
TRIUR3_29857
I
0.879
Traes_4DL_F0BE36C9D
Triticum aestivum
Traes_4DL_F0BE36C9D
I
0.879
Traes_4AS_DBDA5E9C6
Triticum aestivum
Traes_4AS_DBDA5E9C6
I
0.879
MLOC_65101
Hordeum vulgare
MLOC_65101
I
0.879
Bo7g111390
Brassica oleracea
Bo7g111390
I
0.879
NAC018
Arabidopsis thaliana
AT1G52880
D
0.879
Bo1g128420
Brassica oleracea
Bo1g128420
I
0.879
Bostr.0124s0081
Boechera stricta
Bostr.0124s0081
I
0.879
MDP0000674514
Malus domestica
MDP0000674514
I
0.878
GRMZM2G011598
Zea mays
GRMZM2G011598
I
0.875
NAM
Arabidopsis lyrata
fgenesh2_kg.1__4366__AT1G52880.1
I
0.874
OB03G25680
Oryza brachyantha
OB03G25680
I
0.874
GLYMA06G38440
Glycine max
GLYMA06G38440
I
0.874
Cla023770
Citrullus lanatus
Cla023770
I
0.873
Bo3g066880
Brassica oleracea
Bo3g066880
I
0.872
OBART07G26600
Oryza barthii
OBART07G26600
I
0.871
OGLUM07G26630
Oryza glumaepatula
OGLUM07G26630
I
0.871
ORGLA07G0209600
Oryza glaberrima
ORGLA07G0209600
I
0.871
BGIOSGA026407
Oryza indica
BGIOSGA026407
I
0.871
ORUFI07G27590
Oryza rufipogon
ORUFI07G27590
I
0.871
OMERI07G23240
Oryza meridionalis
OMERI07G23240
I
0.871
OGLUM07G26640
Oryza glumaepatula
OGLUM07G26640
I
0.871