Pavir.Ab03009 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Ab03009 T298759_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ANAC050
M07200_2.00
Arabidopsis thaliana
CTTGHNNYNCAAGNA

TNCTTGNRNNDCAAG
Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a
0.885 0.702
ANAC050
M07201_2.00
Arabidopsis thaliana
CTTGNNNHRCAMGBHA

TDVCKTGYDNNNCAAG
Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a
0.885 0.702
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab03009.1.p NAC/NAM 20 155

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G113950 Zea mays GRMZM2G113950 I 0.967
Sb04g037720 Sorghum bicolor Sb04g037720 I 0.967
Pavir.Aa00085 Panicum virgatum Pavir.Aa00085 I 0.964
BRADI3G56080 Brachypodium distachyon BRADI3G56080 I 0.963
Si016620m.g Setaria italica Si016620m.g I 0.962
Traes_6AL_8BA1FF8B2 Triticum aestivum Traes_6AL_8BA1FF8B2 I 0.956
OGLUM02G38880 Oryza glumaepatula OGLUM02G38880 I 0.952
OB02G44540 Oryza brachyantha OB02G44540 I 0.952
OBART02G37700 Oryza barthii OBART02G37700 I 0.952
ORGLA02G0329400 Oryza glaberrima ORGLA02G0329400 I 0.952
ORUFI02G39260 Oryza rufipogon ORUFI02G39260 I 0.952
OPUNC02G34910 Oryza punctata OPUNC02G34910 I 0.952
ONIVA02G40500 Oryza nivara ONIVA02G40500 I 0.952
OS02G0822400 Oryza sativa OS02G0822400 I 0.952
BGIOSGA009316 Oryza indica BGIOSGA009316 I 0.952
LPERR02G31180 Leersia perrieri LPERR02G31180 N 0.947
Si013361m.g Setaria italica Si013361m.g I 0.942
OB08G30590 Oryza brachyantha OB08G30590 I 0.941
LPERR08G20450 Leersia perrieri LPERR08G20450 I 0.941
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I 0.940
Pavir.Fb02407 Panicum virgatum Pavir.Fb02407 I 0.940
Sb07g023900 Sorghum bicolor Sb07g023900 I 0.938
Traes_7BL_FB5FAC1E8 Triticum aestivum Traes_7BL_FB5FAC1E8 I 0.938
F775_27564 Aegilops tauschii F775_27564 I 0.938
Traes_7DS_9FBF54244 Triticum aestivum Traes_7DS_9FBF54244 I 0.938
TRIUR3_33524 Triticum urartu TRIUR3_33524 I 0.938
ORUFI08G26250 Oryza rufipogon ORUFI08G26250 I 0.932
OS08G0562200 Oryza sativa OS08G0562200 I 0.932
ORGLA08G0191600 Oryza glaberrima ORGLA08G0191600 I 0.932
BGIOSGA026481 Oryza indica BGIOSGA026481 I 0.932
OLONG_023179 Oryza longistaminata OLONG_023179 I 0.932
OMERI08G18580 Oryza meridionalis OMERI08G18580 I 0.932
ONIVA08G26810 Oryza nivara ONIVA08G26810 I 0.932
OGLUM08G25240 Oryza glumaepatula OGLUM08G25240 I 0.932
OPUNC08G21700 Oryza punctata OPUNC08G21700 I 0.932
OBART08G23760 Oryza barthii OBART08G23760 I 0.932
BRADI3G12470 Brachypodium distachyon BRADI3G12470 I 0.931
GRMZM2G125777 Zea mays GRMZM2G125777 I 0.919
Bra034118 Brassica rapa Bra034118 I 0.893
Bo1g143850 Brassica oleracea Bo1g143850 I 0.893
mgf000623m Mimulus guttatus mgf000623m I 0.887
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.886
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.885
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.885
ANAC050 Arabidopsis thaliana AT3G10480 D 0.885
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.885
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.885
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.885
Solyc05g055470.2 Solanum lycopersicum Solyc05g055470.2 I 0.883
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I 0.881
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I 0.880
Carubv10013564m.g Capsella rubella Carubv10013564m.g I 0.880
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I 0.880
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I 0.880
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I 0.880
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I 0.880
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I 0.878
Bo1g143840 Brassica oleracea Bo1g143840 I 0.878
PGSC0003DMG402023373 Solanum tuberosum PGSC0003DMG402023373 I 0.878
Bra034119 Brassica rapa Bra034119 I 0.878
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I 0.878
Lus10038670.g Linum usitatissimum Lus10038670.g I 0.876
TCM_043357 Theobroma cacao TCM_043357 I 0.876
Lus10037939.g Linum usitatissimum Lus10037939.g I 0.876
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.874
ANAC052 Arabidopsis thaliana AT3G10490 I 0.873
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I 0.871
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I 0.871