Pavir.Ba02443 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Ba02443 T298770_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G12910
M07204_2.00 		Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR		 Dap-seq
OMalley et al.(2016)
AT3G12910_col_a 		0.947 0.658
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.920 0.518
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.920 0.518
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.920 0.518
NAC48
M11084_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC6_01 		0.904 0.509
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba02443.1.p NAC/NAM 37 173

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Cb00167 Panicum virgatum Pavir.Cb00167 I 0.993
Si022714m.g Setaria italica Si022714m.g I 0.987
Pavir.J31204 Panicum virgatum Pavir.J31204 I 0.986
Sb08g022560 Sorghum bicolor Sb08g022560 I 0.981
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.976
GRMZM2G475014 Zea mays GRMZM2G475014 I 0.974
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.972
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.971
TCM_029321 Theobroma cacao TCM_029321 I 0.958
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I 0.956
VIT_19s0027g00840 Vitis vinifera VIT_19s0027g00840 I 0.952
Gorai.010G171100 Gossypium raimondii Gorai.010G171100 I 0.951
SapurV1A.0059s0580 Salix purpurea SapurV1A.0059s0580 I 0.950
Cla023594 Citrullus lanatus Cla023594 I 0.948
POPTR_0003s14950 Populus trichocarpa POPTR_0003s14950 I 0.947
fgenesh2_kg.3__1353__AT3G12910.1 Arabidopsis lyrata fgenesh2_kg.3__1353__AT3G12910.1 I 0.947
Bra039353 Brassica rapa Bra039353 I 0.947
AT3G12910 Arabidopsis thaliana AT3G12910 D 0.947
Bo1g138800 Brassica oleracea Bo1g138800 I 0.947
Thhalv10021225m.g Eutrema salsugineum Thhalv10021225m.g I 0.947
Gorai.010G236700 Gossypium raimondii Gorai.010G236700 I 0.946
Bra034719 Brassica rapa Bra034719 I 0.945
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I 0.944
PGSC0003DMG400039898 Solanum tuberosum PGSC0003DMG400039898 I 0.943
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.943
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I 0.941
Carubv10014270m.g Capsella rubella Carubv10014270m.g I 0.941
Cagra.5641s0055 Capsella grandiflora Cagra.5641s0055 I 0.941
Bostr.3640s0064 Boechera stricta Bostr.3640s0064 I 0.941
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.940
VIT_19s0027g00910 Vitis vinifera VIT_19s0027g00910 I 0.939
e_gw1.164.18.1 Physcomitrella patens e_gw1.164.18.1 I 0.939
e_gw1.259.4.1 Physcomitrella patens e_gw1.259.4.1 I 0.939
e_gw1.140.53.1 Physcomitrella patens e_gw1.140.53.1 I 0.936
Bo5g133050 Brassica oleracea Bo5g133050 I 0.934
GSMUA_Achr7G21780_001 Musa acuminata GSMUA_Achr7G21780_001 I 0.933
OMERI04G25730 Oryza meridionalis OMERI04G25730 I 0.932
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I 0.932
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.930
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I 0.929
OPUNC04G28220 Oryza punctata OPUNC04G28220 I 0.929
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.928
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.928
Si036303m.g Setaria italica Si036303m.g I 0.926
MTR_2g068880 Medicago truncatula MTR_2g068880 I 0.925
VIT_06s0004g00020 Vitis vinifera VIT_06s0004g00020 I 0.925
Bo3g065200 Brassica oleracea Bo3g065200 I 0.925
BRADI2G03467 Brachypodium distachyon BRADI2G03467 I 0.925
PK26157.1 Cannabis sativa PK26157.1 I 0.924
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.923
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I 0.923
TCM_035160 Theobroma cacao TCM_035160 I 0.923
MTR_2g068920 Medicago truncatula MTR_2g068920 I 0.923
GLYMA14G24220 Glycine max GLYMA14G24220 I 0.923
Gorai.005G088800 Gossypium raimondii Gorai.005G088800 I 0.923
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I 0.923
BGIOSGA014034 Oryza indica BGIOSGA014034 I 0.921
OGLUM04G30580 Oryza glumaepatula OGLUM04G30580 I 0.921
ORGLA04G0270600 Oryza glaberrima ORGLA04G0270600 I 0.921
ONIVA04G29890 Oryza nivara ONIVA04G29890 I 0.921
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.921
OS04G0691300 Oryza sativa OS04G0691300 I 0.921
Solyc11g017470.1 Solanum lycopersicum Solyc11g017470.1 I 0.921
ORUFI04G32410 Oryza rufipogon ORUFI04G32410 I 0.921
Carubv10009926m.g Capsella rubella Carubv10009926m.g I 0.920
Bra033239 Brassica rapa Bra033239 I 0.920
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.920
LPERR07G06440 Leersia perrieri LPERR07G06440 I 0.920
Bo5g001100 Brassica oleracea Bo5g001100 I 0.920
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I 0.920
POPTR_0004s04920 Populus trichocarpa POPTR_0004s04920 I 0.920
anac032 Vitis vinifera VIT_18s0001g02300 I 0.920
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I 0.920
NAC002 Arabidopsis thaliana AT1G01720 D 0.920
GSMUA_Achr4G02390_001 Musa acuminata GSMUA_Achr4G02390_001 I 0.919
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I 0.919
Pavir.Ca02638 Panicum virgatum Pavir.Ca02638 N 0.919
Si022723m.g Setaria italica Si022723m.g I 0.918
GRMZM2G052239 Zea mays GRMZM2G052239 I 0.917
MTR_8g094580 Medicago truncatula MTR_8g094580 I 0.916
ATAF1 Arabidopsis lyrata scaffold_100066.1 I 0.916
mgf013201m Mimulus guttatus mgf013201m I 0.916
GLYMA05G32850 Glycine max GLYMA05G32850 I 0.914
AMTR_s00017p00255350 Amborella trichopoda AMTR_s00017p00255350 I 0.913
GRMZM2G162739 Zea mays GRMZM2G162739 I 0.912
Solyc04g009440.2 Solanum lycopersicum Solyc04g009440.2 I 0.912
Sb02g006680 Sorghum bicolor Sb02g006680 I 0.911
GRMZM2G079632 Zea mays GRMZM2G079632 I 0.911
F775_00272 Aegilops tauschii F775_00272 I 0.909
Pavir.Bb00806 Panicum virgatum Pavir.Bb00806 I 0.908
F775_20638 Aegilops tauschii F775_20638 I 0.907
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.907
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.906
OB05G24820 Oryza brachyantha OB05G24820 I 0.906
Pavir.Ba03301 Panicum virgatum Pavir.Ba03301 I 0.906
OMERI12G14510 Oryza meridionalis OMERI12G14510 I 0.906
ORGLA12G0169600 Oryza glaberrima ORGLA12G0169600 I 0.905
OGLUM12G21360 Oryza glumaepatula OGLUM12G21360 I 0.905
POPTR_0005s07060 Populus trichocarpa POPTR_0005s07060 I 0.905
SapurV1A.0311s0230 Salix purpurea SapurV1A.0311s0230 I 0.905
LPERR05G13490 Leersia perrieri LPERR05G13490 I 0.905
OBART12G19610 Oryza barthii OBART12G19610 I 0.905
Ca_13571 Cicer arietinum Ca_13571 I 0.905
Thhalv10012158m.g Eutrema salsugineum Thhalv10012158m.g I 0.905
ONIVA12G18630 Oryza nivara ONIVA12G18630 I 0.905
ORUFI12G21970 Oryza rufipogon ORUFI12G21970 I 0.905
OPUNC12G17870 Oryza punctata OPUNC12G17870 I 0.905
TRAES3BF002300010CFD_g Triticum aestivum TRAES3BF002300010CFD_g I 0.904
Si002413m.g Setaria italica Si002413m.g I 0.904
Pavir.Ea03621 Panicum virgatum Pavir.Ea03621 I 0.904
TRIUR3_14109 Triticum urartu TRIUR3_14109 I 0.904
Si030752m.g Setaria italica Si030752m.g I 0.904
NAC48 Oryza sativa OS01G0884300 D 0.904
ONIVA01G44460 Oryza nivara ONIVA01G44460 I 0.904
OMERI01G36460 Oryza meridionalis OMERI01G36460 I 0.904
GRMZM2G014653 Zea mays GRMZM2G014653 I 0.904
F775_28813 Aegilops tauschii F775_28813 I 0.904
ORGLA01G0334900 Oryza glaberrima ORGLA01G0334900 I 0.904
LPERR01G34090 Leersia perrieri LPERR01G34090 I 0.904
Sb03g041920 Sorghum bicolor Sb03g041920 I 0.904
MLOC_59162 Hordeum vulgare MLOC_59162 I 0.904
OB01G48340 Oryza brachyantha OB01G48340 I 0.904
OBART01G39590 Oryza barthii OBART01G39590 I 0.904
OGLUM01G43820 Oryza glumaepatula OGLUM01G43820 I 0.904
ORUFI01G42940 Oryza rufipogon ORUFI01G42940 I 0.904
OPUNC01G38300 Oryza punctata OPUNC01G38300 I 0.904
BRADI2G57100 Brachypodium distachyon BRADI2G57100 I 0.904
BGIOSGA000374 Oryza indica BGIOSGA000374 I 0.904
BGIOSGA019897 Oryza indica BGIOSGA019897 I 0.903
ORGLA05G0146600 Oryza glaberrima ORGLA05G0146600 I 0.903
GSMUA_Achr6G18720_001 Musa acuminata GSMUA_Achr6G18720_001 I 0.903
ONIVA05G17670 Oryza nivara ONIVA05G17670 I 0.903
OGLUM05G17980 Oryza glumaepatula OGLUM05G17980 I 0.903
SapurV1A.2021s0010 Salix purpurea SapurV1A.2021s0010 I 0.902
PRUPE_ppa017765mg Prunus persica PRUPE_ppa017765mg I 0.900
POPTR_0007s04780 Populus trichocarpa POPTR_0007s04780 I 0.899
gw1.1.690.1 Physcomitrella patens gw1.1.690.1 I 0.898
ORUFI05G17750 Oryza rufipogon ORUFI05G17750 I 0.898
ONIVA05G17220 Oryza nivara ONIVA05G17220 I 0.898
OS05G0415400 Oryza sativa OS05G0415400 I 0.898
OPUNC05G14600 Oryza punctata OPUNC05G14600 I 0.898
ORGLA05G0143100 Oryza glaberrima ORGLA05G0143100 I 0.898
OBART05G16540 Oryza barthii OBART05G16540 I 0.898
BGIOSGA018048 Oryza indica BGIOSGA018048 I 0.898
OGLUM05G17550 Oryza glumaepatula OGLUM05G17550 I 0.898
Aquca_009_00966 Aquilegia coerulea Aquca_009_00966 I 0.896
gw1.6.394.1 Physcomitrella patens gw1.6.394.1 I 0.896
OB09G25590 Oryza brachyantha OB09G25590 I 0.895
fgenesh1_pg.scaffold_182000024 Physcomitrella patens fgenesh1_pg.scaffold_182000024 I 0.895
OMERI09G14170 Oryza meridionalis OMERI09G14170 I 0.895
LPERR09G14720 Leersia perrieri LPERR09G14720 I 0.895
BRADI4G37327 Brachypodium distachyon BRADI4G37327 I 0.895
ORGLA09G0151800 Oryza glaberrima ORGLA09G0151800 I 0.895
ONIVA09G20130 Oryza nivara ONIVA09G20130 I 0.895
BGIOSGA031230 Oryza indica BGIOSGA031230 I 0.895
OGLUM09G19480 Oryza glumaepatula OGLUM09G19480 I 0.895
MLOC_37843 Hordeum vulgare MLOC_37843 I 0.894
F775_13961 Aegilops tauschii F775_13961 I 0.894
Traes_5BL_8BE382FE3 Triticum aestivum Traes_5BL_8BE382FE3 I 0.894
TRIUR3_13805 Triticum urartu TRIUR3_13805 I 0.894
Traes_5DL_B69423A67 Triticum aestivum Traes_5DL_B69423A67 I 0.894
GSMUA_Achr7G23250_001 Musa acuminata GSMUA_Achr7G23250_001 I 0.894
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.893
GSMUA_Achr11G16860_001 Musa acuminata GSMUA_Achr11G16860_001 I 0.893
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.892
Sb02g032230 Sorghum bicolor Sb02g032230 I 0.892
SapurV1A.0039s0530 Salix purpurea SapurV1A.0039s0530 I 0.891
mgf004020m Mimulus guttatus mgf004020m I 0.891
Pavir.Ba01386 Panicum virgatum Pavir.Ba01386 I 0.890
Pavir.Bb02626 Panicum virgatum Pavir.Bb02626 I 0.890
Pavir.Ga00022 Panicum virgatum Pavir.Ga00022 I 0.889
Eucgr.K02303 Eucalyptus grandis Eucgr.K02303 I 0.889
Si032702m.g Setaria italica Si032702m.g I 0.889
evm.TU.contig_29561 Carica papaya evm.TU.contig_29561 I 0.888
Bostr.0556s0555 Boechera stricta Bostr.0556s0555 I 0.887
F775_23543 Aegilops tauschii F775_23543 I 0.885
OMERI05G14410 Oryza meridionalis OMERI05G14410 I 0.885
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.885
Gorai.006G088400 Gossypium raimondii Gorai.006G088400 I 0.885
TRAES3BF100600040CFD_g Triticum aestivum TRAES3BF100600040CFD_g I 0.885
Cucsa.058780 Cucumis sativus Cucsa.058780 I 0.882
Pavir.Gb00488 Panicum virgatum Pavir.Gb00488 N 0.882
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.881
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.881
mgf002183m Mimulus guttatus mgf002183m I 0.881
Si010680m.g Setaria italica Si010680m.g I 0.880
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.880
BGIOSGA035784 Oryza indica BGIOSGA035784 N 0.879
SapurV1A.0958s0170 Salix purpurea SapurV1A.0958s0170 I 0.878
OS08G0511200 Oryza sativa OS08G0511200 I 0.877
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.877
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.877
GRMZM2G139700 Zea mays GRMZM2G139700 I 0.877
SELMODRAFT_69090 Selaginella moellendorffii SELMODRAFT_69090 I 0.877
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.877
Sb03g000330 Sorghum bicolor Sb03g000330 I 0.876
TCM_029796 Theobroma cacao TCM_029796 I 0.876
LPERR12G01440 Leersia perrieri LPERR12G01440 I 0.875
SELMODRAFT_71305 Selaginella moellendorffii SELMODRAFT_71305 I 0.874