Pavir.Ba02955 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Ba02955 T298771_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC087
M07232_2.00 		Arabidopsis thaliana
TDNCKTSHNNNDYACGYHANB
VNTDRCGTRHNNNDSAMGNHA		 Dap-seq
OMalley et al.(2016)
ANAC087_colamp_a 		0.907 0.728
ANAC087
M07233_2.00 		Arabidopsis thaliana
TWNCKTGWNNNDCAMGYHA
TDRCKTGHNNNWCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC087_col_v3a 		0.907 0.728
NAC59
M11080_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC059_01 		0.880 0.746
NAC92
M00979_2.00 		Arabidopsis thaliana
NNDYACGBHA
TDVCGTRHNN		 PBM
Lindemose et al.(2014)
ANAC092 		0.873 0.763
NAC92
M00730_2.00 		Arabidopsis thaliana
DYACGNHAN
NTDNCGTRH		 PBM
Chang et al.(2013)
pTH7335 		0.873 0.763
NAC92
M07234_2.00 		Arabidopsis thaliana
TWNCKTGHNNHDCAMGYWAY
RTWRCKTGHDNNDCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC092_colamp_a 		0.873 0.763
NAC92
M07235_2.00 		Arabidopsis thaliana
WRCKTGTNNNDCAMG
CKTGHNNNACAMGYW		 Dap-seq
OMalley et al.(2016)
ANAC092_col_v3a 		0.873 0.763
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba02955.1.p NAC/NAM 24 154

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Bb02033 Panicum virgatum Pavir.Bb02033 I 0.965
Pavir.Eb00839 Panicum virgatum Pavir.Eb00839 I 0.933
Pavir.Eb00976 Panicum virgatum Pavir.Eb00976 I 0.933
Pavir.J27836 Panicum virgatum Pavir.J27836 N 0.931
Si002003m.g Setaria italica Si002003m.g N 0.931
TRAES3BF020100120CFD_g Triticum aestivum TRAES3BF020100120CFD_g I 0.929
Traes_5AL_373E730BB Triticum aestivum Traes_5AL_373E730BB I 0.926
Si030284m.g Setaria italica Si030284m.g N 0.925
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I 0.924
MLOC_72737 Hordeum vulgare MLOC_72737 I 0.923
GSMUA_Achr3G09520_001 Musa acuminata GSMUA_Achr3G09520_001 I 0.923
TRIUR3_23644 Triticum urartu TRIUR3_23644 I 0.923
GLYMA16G04720 Glycine max GLYMA16G04720 I 0.923
F775_16032 Aegilops tauschii F775_16032 I 0.922
Traes_5BL_59AFA4B01 Triticum aestivum Traes_5BL_59AFA4B01 I 0.920
GLYMA19G28515 Glycine max GLYMA19G28515 I 0.920
GSMUA_Achr5G07600_001 Musa acuminata GSMUA_Achr5G07600_001 I 0.920
F775_29256 Aegilops tauschii F775_29256 I 0.919
Traes_4DL_D84567626 Triticum aestivum Traes_4DL_D84567626 I 0.919
Traes_3AS_4220612F3 Triticum aestivum Traes_3AS_4220612F3 I 0.919
GSMUA_Achr8G21470_001 Musa acuminata GSMUA_Achr8G21470_001 I 0.919
GSMUA_Achr6G08600_001 Musa acuminata GSMUA_Achr6G08600_001 I 0.917
Si002074m.g Setaria italica Si002074m.g I 0.917
OB01G10300 Oryza brachyantha OB01G10300 I 0.917
OS01G0104500 Oryza sativa OS01G0104500 I 0.917
Traes_4BL_B92B51F5D Triticum aestivum Traes_4BL_B92B51F5D I 0.916
BRADI1G63630 Brachypodium distachyon BRADI1G63630 I 0.916
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I 0.915
Eucgr.A02074 Eucalyptus grandis Eucgr.A02074 I 0.914
MLOC_64057 Hordeum vulgare MLOC_64057 N 0.913
Ca_08255 Cicer arietinum Ca_08255 I 0.913
Traes_7BS_BA1111780 Triticum aestivum Traes_7BS_BA1111780 N 0.913
ANAC087 Arabidopsis thaliana AT5G18270 D 0.913
GRMZM2G159500 Zea mays GRMZM2G159500 I 0.912
Cla012339 Citrullus lanatus Cla012339 I 0.912
Gorai.013G118000 Gossypium raimondii Gorai.013G118000 I 0.912
LPERR01G00270 Leersia perrieri LPERR01G00270 I 0.912
Pavir.J13094 Panicum virgatum Pavir.J13094 I 0.911
Traes_4AS_B95A1C3A1 Triticum aestivum Traes_4AS_B95A1C3A1 I 0.911
Traes_3DS_930F3B5AD Triticum aestivum Traes_3DS_930F3B5AD I 0.911
SapurV1A.0867s0130 Salix purpurea SapurV1A.0867s0130 I 0.911
F775_24687 Aegilops tauschii F775_24687 I 0.911
SapurV1A.1196s0010 Salix purpurea SapurV1A.1196s0010 I 0.911
GRMZM2G031001 Zea mays GRMZM2G031001 I 0.911
TRIUR3_35152 Triticum urartu TRIUR3_35152 I 0.911
POPTR_0013s05110 Populus trichocarpa POPTR_0013s05110 I 0.910
Lus10026879.g Linum usitatissimum Lus10026879.g I 0.910
Pavir.Ib01526 Panicum virgatum Pavir.Ib01526 I 0.909
cassava25877.m1 Manihot esculenta cassava25877.m1 I 0.909
Sb01g036590 Sorghum bicolor Sb01g036590 I 0.909
Cucsa.002980 Cucumis sativus Cucsa.002980 I 0.909
GSMUA_Achr9G16920_001 Musa acuminata GSMUA_Achr9G16920_001 I 0.909
orange1.1g016542m.g Citrus sinensis orange1.1g016542m.g I 0.908
Ciclev10020549m.g Citrus clementina Ciclev10020549m.g I 0.908
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I 0.908
Carubv10001373m.g Capsella rubella Carubv10001373m.g I 0.908
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I 0.908
Bo2g015440 Brassica oleracea Bo2g015440 I 0.907
Bo3g013050 Brassica oleracea Bo3g013050 I 0.907
PRUPE_ppa005770mg Prunus persica PRUPE_ppa005770mg I 0.907
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I 0.907
TCM_026028 Theobroma cacao TCM_026028 I 0.907
Bra023669 Brassica rapa Bra023669 I 0.907
GLYMA02G07760 Glycine max GLYMA02G07760 I 0.907
Bra006449 Brassica rapa Bra006449 I 0.907
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I 0.907
cassava35698.valid.m1 Manihot esculenta cassava35698.valid.m1 I 0.907
GLYMA16G26810 Glycine max GLYMA16G26810 I 0.907
29950.m001171 Ricinus communis 29950.m001171 I 0.906
OGLUM01G00350 Oryza glumaepatula OGLUM01G00350 I 0.906
OGLUM01G19440 Oryza glumaepatula OGLUM01G19440 I 0.906
OMERI01G15230 Oryza meridionalis OMERI01G15230 I 0.906
ONIVA01G00280 Oryza nivara ONIVA01G00280 I 0.906
OBART01G16620 Oryza barthii OBART01G16620 I 0.906
OBART01G00360 Oryza barthii OBART01G00360 I 0.906
BGIOSGA001578 Oryza indica BGIOSGA001578 I 0.906
BGIOSGA002597 Oryza indica BGIOSGA002597 I 0.906
GSMUA_Achr6G32290_001 Musa acuminata GSMUA_Achr6G32290_001 I 0.906
ONIVA01G18370 Oryza nivara ONIVA01G18370 I 0.906
OLONG_022415 Oryza longistaminata OLONG_022415 I 0.906
ORUFI01G00320 Oryza rufipogon ORUFI01G00320 I 0.906
ORUFI01G18470 Oryza rufipogon ORUFI01G18470 I 0.906
ORGLA12G0187900 Oryza glaberrima ORGLA12G0187900 I 0.906
OS01G0393100 Oryza sativa OS01G0393100 I 0.906
Thhalv10014060m.g Eutrema salsugineum Thhalv10014060m.g I 0.905
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I 0.904
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I 0.904
Lus10003435.g Linum usitatissimum Lus10003435.g I 0.904
POPTR_0019s04710 Populus trichocarpa POPTR_0019s04710 I 0.904
OPUNC03G15440 Oryza punctata OPUNC03G15440 N 0.904
F775_29497 Aegilops tauschii F775_29497 I 0.903
Traes_7DS_2452C1E32 Triticum aestivum Traes_7DS_2452C1E32 I 0.903
Traes_7AS_7A7A0CF5B Triticum aestivum Traes_7AS_7A7A0CF5B I 0.903
TRIUR3_25136 Triticum urartu TRIUR3_25136 I 0.903
OMERI01G15210 Oryza meridionalis OMERI01G15210 I 0.902
MDP0000184069 Malus domestica MDP0000184069 I 0.902
Pm025307 Prunus mume Pm025307 I 0.902
GSMUA_Achr7G18330_001 Musa acuminata GSMUA_Achr7G18330_001 I 0.901
PGSC0003DMG400001338 Solanum tuberosum PGSC0003DMG400001338 I 0.897
OMERI03G14250 Oryza meridionalis OMERI03G14250 N 0.897
Solyc02g088180.2 Solanum lycopersicum Solyc02g088180.2 I 0.897
TRIUR3_11787 Triticum urartu TRIUR3_11787 N 0.897
Traes_7AL_38B48B7B2 Triticum aestivum Traes_7AL_38B48B7B2 N 0.897
Carubv10017737m.g Capsella rubella Carubv10017737m.g I 0.896
Eucgr.K01472 Eucalyptus grandis Eucgr.K01472 I 0.896
Bo9g175670 Brassica oleracea Bo9g175670 I 0.895
OPUNC01G00320 Oryza punctata OPUNC01G00320 I 0.893
TRIUR3_00447 Triticum urartu TRIUR3_00447 N 0.893
GSMUA_Achr10G05070_001 Musa acuminata GSMUA_Achr10G05070_001 I 0.893
MTR_6g032770 Medicago truncatula MTR_6g032770 I 0.892
Traes_7AL_C8835D919 Triticum aestivum Traes_7AL_C8835D919 N 0.892
MDP0000232050 Malus domestica MDP0000232050 I 0.890
MDP0000129335 Malus domestica MDP0000129335 I 0.890
Cla010484 Citrullus lanatus Cla010484 I 0.890
VIT_08s0007g07640 Vitis vinifera VIT_08s0007g07640 I 0.890
gene20686-v1.0-hybrid Fragaria vesca gene20686-v1.0-hybrid I 0.890
Sb03g008860 Sorghum bicolor Sb03g008860 N 0.889
F775_25867 Aegilops tauschii F775_25867 N 0.889
Traes_7BL_2782B04F1 Triticum aestivum Traes_7BL_2782B04F1 N 0.889
gene04424-v1.0-hybrid Fragaria vesca gene04424-v1.0-hybrid I 0.886
MTR_7g085260 Medicago truncatula MTR_7g085260 I 0.886
Carubv10005201m.g Capsella rubella Carubv10005201m.g I 0.884
Cla017258 Citrullus lanatus Cla017258 I 0.883
Si035639m.g Setaria italica Si035639m.g N 0.882
Bra036223 Brassica rapa Bra036223 I 0.882
PK26741.1 Cannabis sativa PK26741.1 I 0.881
ATNAC3 Arabidopsis lyrata fgenesh2_kg.5__665__AT3G29035.1 I 0.880
NAC59 Arabidopsis thaliana AT3G29035 D 0.880
Sb02g023960 Sorghum bicolor Sb02g023960 N 0.879
Cagra.6981s0001 Capsella grandiflora Cagra.6981s0001 I 0.879
Thhalv10004583m.g Eutrema salsugineum Thhalv10004583m.g I 0.879
Pavir.Ea00746 Panicum virgatum Pavir.Ea00746 N 0.879
Traes_7DL_2DE6C6D33 Triticum aestivum Traes_7DL_2DE6C6D33 N 0.878
F775_25866 Aegilops tauschii F775_25866 N 0.878
POPTR_0001s40680 Populus trichocarpa POPTR_0001s40680 I 0.878
TRIUR3_00446 Triticum urartu TRIUR3_00446 I 0.878
SapurV1A.0207s0120 Salix purpurea SapurV1A.0207s0120 I 0.878
Ca_19144 Cicer arietinum Ca_19144 I 0.875
PRUPE_ppa007883mg Prunus persica PRUPE_ppa007883mg I 0.875
TRIUR3_14541 Triticum urartu TRIUR3_14541 N 0.875
Pavir.J21394 Panicum virgatum Pavir.J21394 I 0.874
Pavir.J39049 Panicum virgatum Pavir.J39049 I 0.874
Traes_2BS_00566A85C Triticum aestivum Traes_2BS_00566A85C N 0.874
MLOC_65400 Hordeum vulgare MLOC_65400 N 0.874
Traes_2AS_7AAACC26B Triticum aestivum Traes_2AS_7AAACC26B N 0.874
F775_15511 Aegilops tauschii F775_15511 N 0.874
Bra022685 Brassica rapa Bra022685 I 0.874
Bo2g043280 Brassica oleracea Bo2g043280 I 0.874
Eucgr.I01958 Eucalyptus grandis Eucgr.I01958 I 0.874
TRIUR3_20284 Triticum urartu TRIUR3_20284 N 0.874
Aquca_014_00944 Aquilegia coerulea Aquca_014_00944 I 0.874
Bostr.10058s0039 Boechera stricta Bostr.10058s0039 I 0.873
NAC92 Arabidopsis thaliana AT5G39610 D 0.873
ATNAC2 Arabidopsis lyrata fgenesh2_kg.7__3461__AT5G39610.1 I 0.873
Ca_11021 Cicer arietinum Ca_11021 I 0.873
MLOC_58272 Hordeum vulgare MLOC_58272 N 0.873
Cucsa.338700 Cucumis sativus Cucsa.338700 I 0.871
Pm015914 Prunus mume Pm015914 I 0.871
VIT_14s0108g01070 Vitis vinifera VIT_14s0108g01070 I 0.871