Pavir.Ca00926 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Ca00926 T298788_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC073
M07221_2.00
Arabidopsis thaliana
CTTSWNNNWYAMGYH

DRCKTRWNNNWSAAG
Dap-seq
OMalley et al.(2016)
SND2_col_a
0.970 0.851
NAC073
M07222_2.00
Arabidopsis thaliana
CKTSWNNNWYACGYW

WRCGTRWNNNWSAMG
Dap-seq
OMalley et al.(2016)
SND2_colamp_a
0.970 0.851
PK27085.1
M01293_2.00
Cannabis sativa
AATTTATT

AATAAATT
PBM
Lambert et al.(2019)
pTH11262
0.953 0.737
anac075
M07223_2.00
Arabidopsis thaliana
CTTSWNNNWYAMGYT

ARCKTRWNNNWSAAG
Dap-seq
OMalley et al.(2016)
ANAC075_col_a
0.952 0.737
NAC010
M07167_2.00
Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH

DRWDDCKTRWNNNWSAAGNWWN
Dap-seq
OMalley et al.(2016)
SND3_colamp_a
0.938 0.728
NAC010
M07168_2.00
Arabidopsis thaliana
CKTSWNNNWYAMGYW

WRCKTRWNNNWSAMG
Dap-seq
OMalley et al.(2016)
SND3_col_b
0.938 0.728
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00926.1.p NAC/NAM 56 201

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

287 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A_04259 Schistosoma haematobium A_04259 N 0.000
csin107639 Clonorchis sinensis csin107639 N 0.000
DILT_0000112601 Diphyllobothrium latum DILT_0000112601 N 0.000
ECPE_0001508301 Echinostoma caproni ECPE_0001508301 N 0.000
EmuJ_000829600 Echinococcus multilocularis EmuJ_000829600 N 0.000
HmN_000514500 Hymenolepis microstoma HmN_000514500 N 0.000
HNAJ_0000040201 Hymenolepis nana HNAJ_0000040201 N 0.000
PXEA_0001273001 Protopolystoma xenopodis PXEA_0001273001 N 0.000
SCUD_0001647201 Schistosoma curassoni SCUD_0001647201 N 0.000
Smp_128120 Schistosoma mansoni Smp_128120 N 0.000
SMTD_0001069201 Schistosoma mattheei SMTD_0001069201 N 0.000
SMU15005401 Schmidtea mediterranea SMU15005401 N 0.000
T265_05798 Opisthorchis viverrini T265_05798 N 0.000
TRE_0001759501 Trichobilharzia regenti TRE_0001759501 N 0.000
TsM_000416400 Taenia solium TsM_000416400 N 0.000