CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ca02208
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.Ca02208
T298790_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.899
0.486
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.892
0.477
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.892
0.477
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.892
0.477
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ca02208.1.p
NAC/NAM
15
152
PPGFRFRPTDEELVVHYLRRRALAAPLPAAVDIPDVRILAHDPSDLLPPGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVAVAVAVPVPARGQAAQAVLVGMKRSLVFYRGKPPTGSKTDWVMHEYRL
Pavir.Ca02208.2.p
NAC/NAM
15
152
PPGFRFRPTDEELVVHYLRRRALAAPLPAAVDIPDVRILAHDPSDLLPPGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVAVAVAVPVPARGQAAQAVLVGMKRSLVFYRGKPPTGSKTDWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si022924m.g
Setaria italica
Si022924m.g
I
0.996
Pavir.Cb00769
Panicum virgatum
Pavir.Cb00769
I
0.996
OPUNC12G10470
Oryza punctata
OPUNC12G10470
I
0.995
BRADI4G07527
Brachypodium distachyon
BRADI4G07527
I
0.995
OMERI12G08420
Oryza meridionalis
OMERI12G08420
I
0.995
ORUFI10G07040
Oryza rufipogon
ORUFI10G07040
I
0.995
ONIVA12G11920
Oryza nivara
ONIVA12G11920
I
0.995
LPERR12G09780
Leersia perrieri
LPERR12G09780
I
0.995
OS12G0477400
Oryza sativa
OS12G0477400
I
0.995
BGIOSGA037382
Oryza indica
BGIOSGA037382
I
0.995
OGLUM12G13410
Oryza glumaepatula
OGLUM12G13410
I
0.995
GRMZM2G083347
Zea mays
GRMZM2G083347
I
0.993
Sb08g014060
Sorghum bicolor
Sb08g014060
I
0.993
OBART05G16540
Oryza barthii
OBART05G16540
I
0.932
OGLUM05G17550
Oryza glumaepatula
OGLUM05G17550
I
0.932
ORGLA05G0143100
Oryza glaberrima
ORGLA05G0143100
I
0.932
OS05G0415400
Oryza sativa
OS05G0415400
I
0.932
OPUNC05G14600
Oryza punctata
OPUNC05G14600
I
0.932
ONIVA05G17220
Oryza nivara
ONIVA05G17220
I
0.932
ORUFI05G17750
Oryza rufipogon
ORUFI05G17750
I
0.932
BGIOSGA018048
Oryza indica
BGIOSGA018048
I
0.932
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.924
TCM_029796
Theobroma cacao
TCM_029796
I
0.924
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.923
Si036303m.g
Setaria italica
Si036303m.g
I
0.921
mgf004020m
Mimulus guttatus
mgf004020m
I
0.919
OMERI05G14410
Oryza meridionalis
OMERI05G14410
I
0.915
LPERR05G13140
Leersia perrieri
LPERR05G13140
I
0.914
mgf019285m
Mimulus guttatus
mgf019285m
I
0.911
LPERR07G06440
Leersia perrieri
LPERR07G06440
I
0.910
e_gw1.5.134.1
Physcomitrella patens
e_gw1.5.134.1
I
0.908
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.905
Pavir.J36955
Panicum virgatum
Pavir.J36955
I
0.905
GRMZM2G063522
Zea mays
GRMZM2G063522
I
0.905
OPUNC04G28220
Oryza punctata
OPUNC04G28220
I
0.905
Thhalv10023502m.g
Eutrema salsugineum
Thhalv10023502m.g
I
0.905
Cla011742
Citrullus lanatus
Cla011742
I
0.905
MLOC_59162
Hordeum vulgare
MLOC_59162
I
0.905
NAC026
Arabidopsis thaliana
AT1G62700
I
0.905
OB05G24820
Oryza brachyantha
OB05G24820
I
0.903
OB12G19870
Oryza brachyantha
OB12G19870
N
0.901
BRADI2G57100
Brachypodium distachyon
BRADI2G57100
I
0.900
BRADI2G03467
Brachypodium distachyon
BRADI2G03467
I
0.900
F775_28813
Aegilops tauschii
F775_28813
I
0.900
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.900
LPERR05G13490
Leersia perrieri
LPERR05G13490
I
0.900
TRAES3BF002300010CFD_g
Triticum aestivum
TRAES3BF002300010CFD_g
I
0.900
TRIUR3_14109
Triticum urartu
TRIUR3_14109
I
0.900
GRMZM2G014653
Zea mays
GRMZM2G014653
I
0.900
ORGLA01G0334900
Oryza glaberrima
ORGLA01G0334900
I
0.899
Pavir.Ea03621
Panicum virgatum
Pavir.Ea03621
I
0.899
NAC48
Oryza sativa
OS01G0884300
D
0.899
BGIOSGA000374
Oryza indica
BGIOSGA000374
I
0.899
Sb03g041920
Sorghum bicolor
Sb03g041920
I
0.899
ORUFI01G42940
Oryza rufipogon
ORUFI01G42940
I
0.899
Si002413m.g
Setaria italica
Si002413m.g
I
0.899
LPERR01G34090
Leersia perrieri
LPERR01G34090
I
0.899
ONIVA01G44460
Oryza nivara
ONIVA01G44460
I
0.899
OMERI01G36460
Oryza meridionalis
OMERI01G36460
I
0.899
GSMUA_Achr6G18720_001
Musa acuminata
GSMUA_Achr6G18720_001
I
0.899
OPUNC01G38300
Oryza punctata
OPUNC01G38300
I
0.899
OBART01G39590
Oryza barthii
OBART01G39590
I
0.899
OB01G48340
Oryza brachyantha
OB01G48340
I
0.899
OGLUM01G43820
Oryza glumaepatula
OGLUM01G43820
I
0.899
OGLUM05G17980
Oryza glumaepatula
OGLUM05G17980
I
0.898
ORGLA05G0146600
Oryza glaberrima
ORGLA05G0146600
I
0.898
BGIOSGA019897
Oryza indica
BGIOSGA019897
I
0.898
ONIVA05G17670
Oryza nivara
ONIVA05G17670
I
0.898
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
0.897
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
0.897
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.896
TRIUR3_29250
Triticum urartu
TRIUR3_29250
I
0.896
Traes_7DL_BDD45DB24
Triticum aestivum
Traes_7DL_BDD45DB24
I
0.896
TCM_035160
Theobroma cacao
TCM_035160
I
0.896
F775_30297
Aegilops tauschii
F775_30297
I
0.896
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.895
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
0.895
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.895
BRADI1G32660
Brachypodium distachyon
BRADI1G32660
I
0.894
GRMZM2G079632
Zea mays
GRMZM2G079632
I
0.894
Pavir.Bb00806
Panicum virgatum
Pavir.Bb00806
I
0.894
GRMZM2G162739
Zea mays
GRMZM2G162739
I
0.894
Sb02g006680
Sorghum bicolor
Sb02g006680
I
0.894
Si030752m.g
Setaria italica
Si030752m.g
I
0.893
NAC002
Arabidopsis thaliana
AT1G01720
D
0.892
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.892
OGLUM04G30580
Oryza glumaepatula
OGLUM04G30580
I
0.892
ORUFI04G32410
Oryza rufipogon
ORUFI04G32410
I
0.892
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.892
gene18589-v1.0-hybrid
Fragaria vesca
gene18589-v1.0-hybrid
N
0.892
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.892
ORGLA04G0270600
Oryza glaberrima
ORGLA04G0270600
I
0.892
Bra033239
Brassica rapa
Bra033239
I
0.892
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.892
ONIVA04G29890
Oryza nivara
ONIVA04G29890
I
0.892
OS04G0691300
Oryza sativa
OS04G0691300
I
0.892
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.892
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.892
BGIOSGA014034
Oryza indica
BGIOSGA014034
I
0.892
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.891
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
0.890
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.890
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.890
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.889
Pavir.Ga00022
Panicum virgatum
Pavir.Ga00022
I
0.889
Pavir.Ba03301
Panicum virgatum
Pavir.Ba03301
I
0.888
PK26157.1
Cannabis sativa
PK26157.1
I
0.888
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.888
VIT_06s0004g00020
Vitis vinifera
VIT_06s0004g00020
I
0.888
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.888
Si022723m.g
Setaria italica
Si022723m.g
I
0.888
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.887
GRMZM2G052239
Zea mays
GRMZM2G052239
I
0.885
Pavir.Gb00488
Panicum virgatum
Pavir.Gb00488
N
0.885
Gorai.006G088400
Gossypium raimondii
Gorai.006G088400
I
0.885
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.884
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
0.884
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.883
mgf013201m
Mimulus guttatus
mgf013201m
I
0.883
SapurV1A.0365s0200
Salix purpurea
SapurV1A.0365s0200
I
0.882
GLYMA05G32850
Glycine max
GLYMA05G32850
I
0.880
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
0.879
SapurV1A.0869s0210
Salix purpurea
SapurV1A.0869s0210
I
0.874
SapurV1A.0344s0360
Salix purpurea
SapurV1A.0344s0360
I
0.874
mgf002365m
Mimulus guttatus
mgf002365m
I
0.872
MTR_8g094580
Medicago truncatula
MTR_8g094580
I
0.872
F775_23543
Aegilops tauschii
F775_23543
I
0.871
TRAES3BF100600040CFD_g
Triticum aestivum
TRAES3BF100600040CFD_g
I
0.871
POPTR_0004s04920
Populus trichocarpa
POPTR_0004s04920
I
0.871