Pavir.Fb01938 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Fb01938 T298854_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC031
M07182_2.00
Arabidopsis thaliana
NTWDCKTGTNNHWYACGY

RCGTRWDNNACAMGHWAN
Dap-seq
OMalley et al.(2016)
CUC3_col_a
0.901 0.719
NAC031
M07183_2.00
Arabidopsis thaliana
CKTGTNNHDCACGYHA

TDRCGTGHDNNACAMG
Dap-seq
OMalley et al.(2016)
CUC3_colamp_a
0.901 0.719
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA

TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.899 0.754
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG

CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.899 0.754
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW

WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.872 0.746
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01938.1.p NAC/NAM 29 155

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Fa00438 Panicum virgatum Pavir.Fa00438 I 0.971
Pavir.Fa00294 Panicum virgatum Pavir.Fa00294 I 0.971
GRMZM2G430522 Zea mays GRMZM2G430522 I 0.970
Si015498m.g Setaria italica Si015498m.g I 0.970
Sb07g027650 Sorghum bicolor Sb07g027650 I 0.970
OB08G27000 Oryza brachyantha OB08G27000 I 0.965
GSMUA_Achr9G20090_001 Musa acuminata GSMUA_Achr9G20090_001 I 0.955
POPTR_0002s00730 Populus trichocarpa POPTR_0002s00730 I 0.954
SapurV1A.0016s0340 Salix purpurea SapurV1A.0016s0340 I 0.952
gene31474-v1.0-hybrid Fragaria vesca gene31474-v1.0-hybrid I 0.950
Gorai.009G186000 Gossypium raimondii Gorai.009G186000 I 0.949
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.949
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.948
Eucgr.F03588 Eucalyptus grandis Eucgr.F03588 I 0.948
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.948
Lus10013205.g Linum usitatissimum Lus10013205.g I 0.947
Ciclev10001403m.g Citrus clementina Ciclev10001403m.g I 0.947
cassava21580.m1 Manihot esculenta cassava21580.m1 I 0.947
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.947
POPTR_0005s27720 Populus trichocarpa POPTR_0005s27720 I 0.947
SapurV1A.0266s0070 Salix purpurea SapurV1A.0266s0070 I 0.947
OS08G0511200 Oryza sativa OS08G0511200 I 0.947
CUC3 Vitis vinifera VIT_18s0122g00800 I 0.947
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.947
orange1.1g016283m.g Citrus sinensis orange1.1g016283m.g I 0.947
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.947
Pm022916 Prunus mume Pm022916 I 0.946
TCM_034835 Theobroma cacao TCM_034835 I 0.945
30170.m014236 Ricinus communis 30170.m014236 I 0.945
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.943
Gorai.002G113300 Gossypium raimondii Gorai.002G113300 I 0.943
Lus10030723.g Linum usitatissimum Lus10030723.g I 0.942
mgf023466m Mimulus guttatus mgf023466m I 0.942
PRUPE_ppa022238mg Prunus persica PRUPE_ppa022238mg I 0.941
cassava21054.m1 Manihot esculenta cassava21054.m1 I 0.940
Cucsa.272370 Cucumis sativus Cucsa.272370 I 0.939
Cla023834 Citrullus lanatus Cla023834 I 0.939
Aquca_015_00272 Aquilegia coerulea Aquca_015_00272 I 0.938
Aquca_007_00948 Aquilegia coerulea Aquca_007_00948 I 0.934
PK13964.1 Cannabis sativa PK13964.1 I 0.930
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.929
MDP0000167208 Malus domestica MDP0000167208 I 0.928
MDP0000191344 Malus domestica MDP0000191344 I 0.928
evm.TU.supercontig_286.12 Carica papaya evm.TU.supercontig_286.12 I 0.927
Bra015750 Brassica rapa Bra015750 I 0.926
Bra008259 Brassica rapa Bra008259 I 0.926
Bo6g120460 Brassica oleracea Bo6g120460 I 0.926
mgf018675m Mimulus guttatus mgf018675m I 0.925
OLONG_023103 Oryza longistaminata OLONG_023103 I 0.924
Thhalv10019493m.g Eutrema salsugineum Thhalv10019493m.g I 0.919
Bo2g089890 Brassica oleracea Bo2g089890 I 0.914
ORGLA06G0124600 Oryza glaberrima ORGLA06G0124600 I 0.913
OS06G0344900 Oryza sativa OS06G0344900 I 0.913
BGIOSGA022861 Oryza indica BGIOSGA022861 I 0.913
ORUFI06G14810 Oryza rufipogon ORUFI06G14810 I 0.913
OPUNC06G13130 Oryza punctata OPUNC06G13130 I 0.913
OBART06G13940 Oryza barthii OBART06G13940 I 0.913
OB06G22100 Oryza brachyantha OB06G22100 I 0.913
OLONG_019251 Oryza longistaminata OLONG_019251 I 0.913
OGLUM06G14810 Oryza glumaepatula OGLUM06G14810 I 0.913
ONIVA03G33370 Oryza nivara ONIVA03G33370 I 0.913
MDP0000135860 Malus domestica MDP0000135860 I 0.912
LPERR06G12840 Leersia perrieri LPERR06G12840 I 0.910
GRMZM2G139700 Zea mays GRMZM2G139700 I 0.908
Bostr.20129s0079 Boechera stricta Bostr.20129s0079 I 0.907
Cagra.0799s0114 Capsella grandiflora Cagra.0799s0114 I 0.905
Carubv10022061m.g Capsella rubella Carubv10022061m.g I 0.905
PRUPE_ppa026810mg Prunus persica PRUPE_ppa026810mg I 0.904
Pm011397 Prunus mume Pm011397 I 0.904
cassava44869.m1 Manihot esculenta cassava44869.m1 I 0.904
MDP0000310981 Malus domestica MDP0000310981 I 0.904
Sb02g028870 Sorghum bicolor Sb02g028870 I 0.903
Sb08g006330 Sorghum bicolor Sb08g006330 I 0.903
Si030187m.g Setaria italica Si030187m.g I 0.903
Pavir.J02772 Panicum virgatum Pavir.J02772 I 0.903
Pavir.J00978 Panicum virgatum Pavir.J00978 I 0.903
Si007886m.g Setaria italica Si007886m.g I 0.903
OMERI07G04410 Oryza meridionalis OMERI07G04410 I 0.903
ONIVA09G15800 Oryza nivara ONIVA09G15800 I 0.903
OPUNC09G13640 Oryza punctata OPUNC09G13640 I 0.903
BGIOSGA029508 Oryza indica BGIOSGA029508 I 0.903
OLONG_009674 Oryza longistaminata OLONG_009674 I 0.903
OGLUM09G15820 Oryza glumaepatula OGLUM09G15820 I 0.903
LPERR09G11330 Leersia perrieri LPERR09G11330 I 0.903
GRMZM2G393433 Zea mays GRMZM2G393433 I 0.903
OBART09G15220 Oryza barthii OBART09G15220 I 0.903
ORUFI09G16430 Oryza rufipogon ORUFI09G16430 I 0.903
ORGLA09G0117400 Oryza glaberrima ORGLA09G0117400 I 0.903
OS09G0497900 Oryza sativa OS09G0497900 I 0.903
Ca_22370 Cicer arietinum Ca_22370 I 0.901
NAC031 Arabidopsis thaliana AT1G76420 D 0.901
Gorai.013G171300 Gossypium raimondii Gorai.013G171300 I 0.901
CUC3 Arabidopsis lyrata fgenesh2_kg.2__1929__AT1G76420.1 I 0.900
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I 0.899
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I 0.899
Carubv10028330m.g Capsella rubella Carubv10028330m.g I 0.899
Gorai.002G067300 Gossypium raimondii Gorai.002G067300 I 0.899
evm.TU.supercontig_131.88 Carica papaya evm.TU.supercontig_131.88 I 0.899
NAC098 Arabidopsis thaliana AT5G53950 D 0.899
27950.m000105 Ricinus communis 27950.m000105 I 0.899
TCM_031619 Theobroma cacao TCM_031619 I 0.899
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I 0.899
Bo9g113820 Brassica oleracea Bo9g113820 I 0.899
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I 0.899
Lus10041924.g Linum usitatissimum Lus10041924.g I 0.897
Lus10005537.g Linum usitatissimum Lus10005537.g I 0.897
GSMUA_Achr10G22350_001 Musa acuminata GSMUA_Achr10G22350_001 I 0.896
AMTR_s00058p00136280 Amborella trichopoda AMTR_s00058p00136280 I 0.896
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I 0.894
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I 0.894
GLYMA09G37050 Glycine max GLYMA09G37050 I 0.894
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I 0.894
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.893
GRMZM2G386163 Zea mays GRMZM2G386163 I 0.892
Ciclev10012093m.g Citrus clementina Ciclev10012093m.g I 0.890
orange1.1g018950m.g Citrus sinensis orange1.1g018950m.g I 0.890
GLYMA13G05540 Glycine max GLYMA13G05540 I 0.889
VIT_19s0014g02200 Vitis vinifera VIT_19s0014g02200 I 0.889
F775_20638 Aegilops tauschii F775_20638 I 0.888
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.888
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.888
orange1.1g047710m.g Citrus sinensis orange1.1g047710m.g I 0.887
Bra022685 Brassica rapa Bra022685 I 0.887
MDP0000198235 Malus domestica MDP0000198235 I 0.887
Bo2g043280 Brassica oleracea Bo2g043280 I 0.887
Ciclev10008619m.g Citrus clementina Ciclev10008619m.g I 0.887
GLYMA18G49620 Glycine max GLYMA18G49620 I 0.886
LjSGA_071377.1 Lotus japonicus LjSGA_071377.1 I 0.886
Cla023717 Citrullus lanatus Cla023717 I 0.885
VIT_14s0108g01070 Vitis vinifera VIT_14s0108g01070 I 0.885
Cucsa.122890 Cucumis sativus Cucsa.122890 I 0.885
mgf017531m Mimulus guttatus mgf017531m I 0.885
GLYMA06G35660 Glycine max GLYMA06G35660 I 0.884
GLYMA12G26190 Glycine max GLYMA12G26190 I 0.884
AMTR_s00010p00266320 Amborella trichopoda AMTR_s00010p00266320 I 0.883
BRADI4G34157 Brachypodium distachyon BRADI4G34157 I 0.882
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I 0.882
GLYMA19G02850 Glycine max GLYMA19G02850 I 0.882
chr3.CM0282.730.nc Lotus japonicus chr3.CM0282.730.nc I 0.881
Ca_22532 Cicer arietinum Ca_22532 I 0.880
SapurV1A.0207s0120 Salix purpurea SapurV1A.0207s0120 I 0.879
POPTR_0001s40680 Populus trichocarpa POPTR_0001s40680 I 0.879
MTR_3g070030 Medicago truncatula MTR_3g070030 I 0.879
TCM_018621 Theobroma cacao TCM_018621 I 0.878
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I 0.878
Solyc02g088180.2 Solanum lycopersicum Solyc02g088180.2 I 0.876
PRUPE_ppa007883mg Prunus persica PRUPE_ppa007883mg I 0.876
Eucgr.I01958 Eucalyptus grandis Eucgr.I01958 I 0.876
GLYMA13G34950 Glycine max GLYMA13G34950 I 0.876
PGSC0003DMG400001338 Solanum tuberosum PGSC0003DMG400001338 I 0.876
GLYMA12G35530 Glycine max GLYMA12G35530 I 0.876
Aquca_033_00035 Aquilegia coerulea Aquca_033_00035 I 0.875
MTR_2g078700 Medicago truncatula MTR_2g078700 I 0.875
OB09G21720 Oryza brachyantha OB09G21720 I 0.874
gene00971-v1.0-hybrid Fragaria vesca gene00971-v1.0-hybrid I 0.873
Gorai.007G079900 Gossypium raimondii Gorai.007G079900 I 0.873
e_gw1.288.15.1 Physcomitrella patens e_gw1.288.15.1 D 0.872
OB04G22290 Oryza brachyantha OB04G22290 I 0.872
MDP0000276765 Malus domestica MDP0000276765 I 0.872
Pm015914 Prunus mume Pm015914 I 0.871