CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ga00022
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.Ga00022
T298857_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.875
0.583
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.875
0.583
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.875
0.583
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.874
0.574
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ga00022.1.p
NAC/NAM
12
146
PPGFRFHPRDDELVLDYLCRKLSGGGGGAYGGIAMVDVDLNKCEPWELPDEACVGSREWYFFSLHDRKYATGQRTNRATRSGYWKATGKDRPISISGRRGGGAATMVGMRKTLVFYQGRAPRGSKTEWVMHEFRV
Pavir.Ga00022.2.p
NAC/NAM
12
146
PPGFRFHPRDDELVLDYLCRKLSGGGGGAYGGIAMVDVDLNKCEPWELPDEACVGSREWYFFSLHDRKYATGQRTNRATRSGYWKATGKDRPISISGRRGGGAATMVGMRKTLVFYQGRAPRGSKTEWVMHEFRV
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
180 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Gb00488
Panicum virgatum
Pavir.Gb00488
N
0.997
Si010680m.g
Setaria italica
Si010680m.g
I
0.996
Pavir.J36955
Panicum virgatum
Pavir.J36955
I
0.985
GRMZM2G063522
Zea mays
GRMZM2G063522
I
0.985
BRADI1G32660
Brachypodium distachyon
BRADI1G32660
I
0.984
Pavir.Db00380
Panicum virgatum
Pavir.Db00380
N
0.982
Si006975m.g
Setaria italica
Si006975m.g
N
0.980
Sb07g005610
Sorghum bicolor
Sb07g005610
I
0.978
TRIUR3_34020
Triticum urartu
TRIUR3_34020
N
0.977
OLONG_010248
Oryza longistaminata
OLONG_010248
N
0.977
Traes_2AL_CA89051FD
Triticum aestivum
Traes_2AL_CA89051FD
N
0.977
GRMZM2G167018
Zea mays
GRMZM2G167018
I
0.977
OMERI04G21180
Oryza meridionalis
OMERI04G21180
N
0.976
Sb10g027100
Sorghum bicolor
Sb10g027100
N
0.973
MLOC_25708
Hordeum vulgare
MLOC_25708
N
0.973
ORGLA04G0226100
Oryza glaberrima
ORGLA04G0226100
N
0.970
Traes_7DL_BDD45DB24
Triticum aestivum
Traes_7DL_BDD45DB24
I
0.970
F775_30297
Aegilops tauschii
F775_30297
I
0.970
TRIUR3_29250
Triticum urartu
TRIUR3_29250
I
0.970
MLOC_53744
Hordeum vulgare
MLOC_53744
N
0.966
Traes_7AL_BE3253C8F
Triticum aestivum
Traes_7AL_BE3253C8F
N
0.965
F775_26920
Aegilops tauschii
F775_26920
N
0.965
TRIUR3_03895
Triticum urartu
TRIUR3_03895
N
0.965
LPERR06G20430
Leersia perrieri
LPERR06G20430
N
0.964
OBART04G25950
Oryza barthii
OBART04G25950
N
0.961
cassava27052.m1
Manihot esculenta
cassava27052.m1
I
0.957
mgf004020m
Mimulus guttatus
mgf004020m
I
0.930
Si036303m.g
Setaria italica
Si036303m.g
I
0.929
ORGLA05G0143100
Oryza glaberrima
ORGLA05G0143100
I
0.928
ORUFI05G17750
Oryza rufipogon
ORUFI05G17750
I
0.928
BGIOSGA018048
Oryza indica
BGIOSGA018048
I
0.928
OGLUM05G17550
Oryza glumaepatula
OGLUM05G17550
I
0.928
OS05G0415400
Oryza sativa
OS05G0415400
I
0.928
ONIVA05G17220
Oryza nivara
ONIVA05G17220
I
0.928
OPUNC05G14600
Oryza punctata
OPUNC05G14600
I
0.928
OBART05G16540
Oryza barthii
OBART05G16540
I
0.928
Solyc04g009440.2
Solanum lycopersicum
Solyc04g009440.2
I
0.927
Sb06g028800
Sorghum bicolor
Sb06g028800
N
0.926
OMERI05G14410
Oryza meridionalis
OMERI05G14410
I
0.922
Cla023574
Citrullus lanatus
Cla023574
N
0.921
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.921
GLYMA08G18470
Glycine max
GLYMA08G18470
N
0.916
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.914
OGLUM04G25460
Oryza glumaepatula
OGLUM04G25460
N
0.912
Gorai.006G088400
Gossypium raimondii
Gorai.006G088400
I
0.911
ORGLA04G0270600
Oryza glaberrima
ORGLA04G0270600
I
0.910
BGIOSGA014034
Oryza indica
BGIOSGA014034
I
0.910
ONIVA04G24570
Oryza nivara
ONIVA04G24570
N
0.910
ONIVA04G29890
Oryza nivara
ONIVA04G29890
I
0.910
OGLUM04G30580
Oryza glumaepatula
OGLUM04G30580
I
0.910
OS04G0691300
Oryza sativa
OS04G0691300
I
0.910
ORUFI04G32410
Oryza rufipogon
ORUFI04G32410
I
0.910
SapurV1A.2021s0010
Salix purpurea
SapurV1A.2021s0010
I
0.910
MTR_1g008740
Medicago truncatula
MTR_1g008740
I
0.910
POPTR_0005s07060
Populus trichocarpa
POPTR_0005s07060
I
0.909
SapurV1A.0311s0230
Salix purpurea
SapurV1A.0311s0230
I
0.909
e_gw1.5.134.1
Physcomitrella patens
e_gw1.5.134.1
I
0.907
POPTR_0007s04780
Populus trichocarpa
POPTR_0007s04780
I
0.907
MTR_3g096400
Medicago truncatula
MTR_3g096400
N
0.907
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.907
GLYMA05G32850
Glycine max
GLYMA05G32850
I
0.903
MTR_8g094580
Medicago truncatula
MTR_8g094580
I
0.902
SapurV1A.0039s0530
Salix purpurea
SapurV1A.0039s0530
I
0.901
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
0.901
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
0.900
e_gw1.259.32.1
Physcomitrella patens
e_gw1.259.32.1
I
0.900
OPUNC08G18240
Oryza punctata
OPUNC08G18240
I
0.899
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.898
OPUNC04G23070
Oryza punctata
OPUNC04G23070
N
0.898
MLOC_13932
Hordeum vulgare
MLOC_13932
I
0.898
MLOC_65286
Hordeum vulgare
MLOC_65286
I
0.897
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.896
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
0.894
VIT_06s0004g00020
Vitis vinifera
VIT_06s0004g00020
I
0.894
Traes_7AL_74CC91D39
Triticum aestivum
Traes_7AL_74CC91D39
I
0.892
OS08G0511200
Oryza sativa
OS08G0511200
I
0.892
ORUFI08G22550
Oryza rufipogon
ORUFI08G22550
I
0.892
ORGLA08G0177600
Oryza glaberrima
ORGLA08G0177600
I
0.892
OGLUM08G21360
Oryza glumaepatula
OGLUM08G21360
I
0.892
LPERR08G17020
Leersia perrieri
LPERR08G17020
I
0.892
F775_20638
Aegilops tauschii
F775_20638
I
0.892
BGIOSGA026695
Oryza indica
BGIOSGA026695
I
0.891
ONIVA08G22710
Oryza nivara
ONIVA08G22710
I
0.891
OB04G32440
Oryza brachyantha
OB04G32440
N
0.891
OPUNC06G22270
Oryza punctata
OPUNC06G22270
N
0.891
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.890
GRMZM2G162739
Zea mays
GRMZM2G162739
I
0.890
Si022924m.g
Setaria italica
Si022924m.g
I
0.889
Pavir.Ca02208
Panicum virgatum
Pavir.Ca02208
I
0.889
Sb02g006680
Sorghum bicolor
Sb02g006680
I
0.889
GRMZM2G079632
Zea mays
GRMZM2G079632
I
0.889
Pavir.Cb00769
Panicum virgatum
Pavir.Cb00769
I
0.889
Pavir.Ba02443
Panicum virgatum
Pavir.Ba02443
I
0.889
TCM_035160
Theobroma cacao
TCM_035160
I
0.886
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.886
mgf013201m
Mimulus guttatus
mgf013201m
I
0.886
Pavir.Ba03301
Panicum virgatum
Pavir.Ba03301
I
0.885
GRMZM2G139700
Zea mays
GRMZM2G139700
I
0.885
GRMZM2G083347
Zea mays
GRMZM2G083347
I
0.884
Pavir.Fb00532
Panicum virgatum
Pavir.Fb00532
N
0.884
LPERR05G13140
Leersia perrieri
LPERR05G13140
I
0.883
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.883
Pavir.Bb00806
Panicum virgatum
Pavir.Bb00806
I
0.883
LPERR07G06440
Leersia perrieri
LPERR07G06440
I
0.883
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.883
Si030752m.g
Setaria italica
Si030752m.g
I
0.882
ORUFI06G26420
Oryza rufipogon
ORUFI06G26420
N
0.882
BGIOSGA023457
Oryza indica
BGIOSGA023457
N
0.882
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.882
ONIVA02G35380
Oryza nivara
ONIVA02G35380
N
0.882
OS06G0675600
Oryza sativa
OS06G0675600
N
0.882
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.882
Cla011742
Citrullus lanatus
Cla011742
I
0.882
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.882
OBART06G24550
Oryza barthii
OBART06G24550
N
0.882
ORGLA06G0205600
Oryza glaberrima
ORGLA06G0205600
N
0.882
OGLUM06G25850
Oryza glumaepatula
OGLUM06G25850
N
0.882
OMERI06G24740
Oryza meridionalis
OMERI06G24740
N
0.881
BRADI2G03467
Brachypodium distachyon
BRADI2G03467
I
0.880
Sb08g014060
Sorghum bicolor
Sb08g014060
I
0.880
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.880
PGSC0003DMG400029593
Solanum tuberosum
PGSC0003DMG400029593
I
0.879
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.879
POPTR_0004s04920
Populus trichocarpa
POPTR_0004s04920
I
0.877
Sb03g000330
Sorghum bicolor
Sb03g000330
I
0.877
SELMODRAFT_69090
Selaginella moellendorffii
SELMODRAFT_69090
I
0.876
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
0.876
PK26157.1
Cannabis sativa
PK26157.1
I
0.876
BRADI2G57100
Brachypodium distachyon
BRADI2G57100
I
0.876
SELMODRAFT_71305
Selaginella moellendorffii
SELMODRAFT_71305
I
0.876
BRADI4G07527
Brachypodium distachyon
BRADI4G07527
I
0.876
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.875
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.875
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.875
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.875
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.875
Bra033239
Brassica rapa
Bra033239
I
0.875
NAC002
Arabidopsis thaliana
AT1G01720
D
0.875
F775_28813
Aegilops tauschii
F775_28813
I
0.875
TRAES3BF002300010CFD_g
Triticum aestivum
TRAES3BF002300010CFD_g
I
0.875
Solyc08g074300.2
Solanum lycopersicum
Solyc08g074300.2
I
0.875
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.875
GSMUA_Achr6G18720_001
Musa acuminata
GSMUA_Achr6G18720_001
I
0.875
TRIUR3_14109
Triticum urartu
TRIUR3_14109
I
0.875
MLOC_59162
Hordeum vulgare
MLOC_59162
I
0.875
OBART01G39590
Oryza barthii
OBART01G39590
I
0.874
OB05G24820
Oryza brachyantha
OB05G24820
I
0.874
NAC48
Oryza sativa
OS01G0884300
D
0.874
ONIVA01G44460
Oryza nivara
ONIVA01G44460
I
0.874
ORGLA01G0334900
Oryza glaberrima
ORGLA01G0334900
I
0.874
BGIOSGA000374
Oryza indica
BGIOSGA000374
I
0.874
ORUFI01G42940
Oryza rufipogon
ORUFI01G42940
I
0.874
Si022714m.g
Setaria italica
Si022714m.g
I
0.874
OMERI01G36460
Oryza meridionalis
OMERI01G36460
I
0.874
OGLUM01G43820
Oryza glumaepatula
OGLUM01G43820
I
0.874
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.874
LPERR01G34090
Leersia perrieri
LPERR01G34090
I
0.874
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.874
LPERR05G13490
Leersia perrieri
LPERR05G13490
I
0.874
OPUNC01G38300
Oryza punctata
OPUNC01G38300
I
0.874
OB01G48340
Oryza brachyantha
OB01G48340
I
0.874
Sb03g041920
Sorghum bicolor
Sb03g041920
I
0.873
AMTR_s00022p00160350
Amborella trichopoda
AMTR_s00022p00160350
I
0.873
BGIOSGA019897
Oryza indica
BGIOSGA019897
I
0.872
ORGLA05G0146600
Oryza glaberrima
ORGLA05G0146600
I
0.872
ONIVA05G17670
Oryza nivara
ONIVA05G17670
I
0.872
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
0.872
GRMZM2G014653
Zea mays
GRMZM2G014653
I
0.872
OGLUM05G17980
Oryza glumaepatula
OGLUM05G17980
I
0.872
Si002413m.g
Setaria italica
Si002413m.g
I
0.872
ONIVA12G11920
Oryza nivara
ONIVA12G11920
I
0.871
SapurV1A.0365s0200
Salix purpurea
SapurV1A.0365s0200
I
0.871
GSMUA_Achr9G10210_001
Musa acuminata
GSMUA_Achr9G10210_001
N
0.871
ORUFI10G07040
Oryza rufipogon
ORUFI10G07040
I
0.871
TCM_029796
Theobroma cacao
TCM_029796
I
0.871
OS12G0477400
Oryza sativa
OS12G0477400
I
0.871
OGLUM12G13410
Oryza glumaepatula
OGLUM12G13410
I
0.871
OMERI12G08420
Oryza meridionalis
OMERI12G08420
I
0.871
BGIOSGA037382
Oryza indica
BGIOSGA037382
I
0.871