Pavir.Ga00022 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Ga00022 T298857_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN

NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.875 0.583
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND

HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.875 0.583
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY

RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.875 0.583
NAC48
M11084_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.874 0.574
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga00022.1.p NAC/NAM 12 146
Pavir.Ga00022.2.p NAC/NAM 12 146

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Gb00488 Panicum virgatum Pavir.Gb00488 N 0.997
Si010680m.g Setaria italica Si010680m.g I 0.996
Pavir.J36955 Panicum virgatum Pavir.J36955 I 0.985
GRMZM2G063522 Zea mays GRMZM2G063522 I 0.985
BRADI1G32660 Brachypodium distachyon BRADI1G32660 I 0.984
Pavir.Db00380 Panicum virgatum Pavir.Db00380 N 0.982
Si006975m.g Setaria italica Si006975m.g N 0.980
Sb07g005610 Sorghum bicolor Sb07g005610 I 0.978
TRIUR3_34020 Triticum urartu TRIUR3_34020 N 0.977
OLONG_010248 Oryza longistaminata OLONG_010248 N 0.977
Traes_2AL_CA89051FD Triticum aestivum Traes_2AL_CA89051FD N 0.977
GRMZM2G167018 Zea mays GRMZM2G167018 I 0.977
OMERI04G21180 Oryza meridionalis OMERI04G21180 N 0.976
Sb10g027100 Sorghum bicolor Sb10g027100 N 0.973
MLOC_25708 Hordeum vulgare MLOC_25708 N 0.973
ORGLA04G0226100 Oryza glaberrima ORGLA04G0226100 N 0.970
Traes_7DL_BDD45DB24 Triticum aestivum Traes_7DL_BDD45DB24 I 0.970
F775_30297 Aegilops tauschii F775_30297 I 0.970
TRIUR3_29250 Triticum urartu TRIUR3_29250 I 0.970
MLOC_53744 Hordeum vulgare MLOC_53744 N 0.966
Traes_7AL_BE3253C8F Triticum aestivum Traes_7AL_BE3253C8F N 0.965
F775_26920 Aegilops tauschii F775_26920 N 0.965
TRIUR3_03895 Triticum urartu TRIUR3_03895 N 0.965
LPERR06G20430 Leersia perrieri LPERR06G20430 N 0.964
OBART04G25950 Oryza barthii OBART04G25950 N 0.961
cassava27052.m1 Manihot esculenta cassava27052.m1 I 0.957
mgf004020m Mimulus guttatus mgf004020m I 0.930
Si036303m.g Setaria italica Si036303m.g I 0.929
ORGLA05G0143100 Oryza glaberrima ORGLA05G0143100 I 0.928
ORUFI05G17750 Oryza rufipogon ORUFI05G17750 I 0.928
BGIOSGA018048 Oryza indica BGIOSGA018048 I 0.928
OGLUM05G17550 Oryza glumaepatula OGLUM05G17550 I 0.928
OS05G0415400 Oryza sativa OS05G0415400 I 0.928
ONIVA05G17220 Oryza nivara ONIVA05G17220 I 0.928
OPUNC05G14600 Oryza punctata OPUNC05G14600 I 0.928
OBART05G16540 Oryza barthii OBART05G16540 I 0.928
Solyc04g009440.2 Solanum lycopersicum Solyc04g009440.2 I 0.927
Sb06g028800 Sorghum bicolor Sb06g028800 N 0.926
OMERI05G14410 Oryza meridionalis OMERI05G14410 I 0.922
Cla023574 Citrullus lanatus Cla023574 N 0.921
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.921
GLYMA08G18470 Glycine max GLYMA08G18470 N 0.916
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.914
OGLUM04G25460 Oryza glumaepatula OGLUM04G25460 N 0.912
Gorai.006G088400 Gossypium raimondii Gorai.006G088400 I 0.911
ORGLA04G0270600 Oryza glaberrima ORGLA04G0270600 I 0.910
BGIOSGA014034 Oryza indica BGIOSGA014034 I 0.910
ONIVA04G24570 Oryza nivara ONIVA04G24570 N 0.910
ONIVA04G29890 Oryza nivara ONIVA04G29890 I 0.910
OGLUM04G30580 Oryza glumaepatula OGLUM04G30580 I 0.910
OS04G0691300 Oryza sativa OS04G0691300 I 0.910
ORUFI04G32410 Oryza rufipogon ORUFI04G32410 I 0.910
SapurV1A.2021s0010 Salix purpurea SapurV1A.2021s0010 I 0.910
MTR_1g008740 Medicago truncatula MTR_1g008740 I 0.910
POPTR_0005s07060 Populus trichocarpa POPTR_0005s07060 I 0.909
SapurV1A.0311s0230 Salix purpurea SapurV1A.0311s0230 I 0.909
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.907
POPTR_0007s04780 Populus trichocarpa POPTR_0007s04780 I 0.907
MTR_3g096400 Medicago truncatula MTR_3g096400 N 0.907
GSMUA_Achr7G21780_001 Musa acuminata GSMUA_Achr7G21780_001 I 0.907
GLYMA05G32850 Glycine max GLYMA05G32850 I 0.903
MTR_8g094580 Medicago truncatula MTR_8g094580 I 0.902
SapurV1A.0039s0530 Salix purpurea SapurV1A.0039s0530 I 0.901
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I 0.901
e_gw1.259.4.1 Physcomitrella patens e_gw1.259.4.1 I 0.900
e_gw1.259.32.1 Physcomitrella patens e_gw1.259.32.1 I 0.900
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.899
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.898
OPUNC04G23070 Oryza punctata OPUNC04G23070 N 0.898
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.898
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.897
GSMUA_Achr4G02390_001 Musa acuminata GSMUA_Achr4G02390_001 I 0.896
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I 0.894
VIT_06s0004g00020 Vitis vinifera VIT_06s0004g00020 I 0.894
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.892
OS08G0511200 Oryza sativa OS08G0511200 I 0.892
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.892
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.892
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.892
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.892
F775_20638 Aegilops tauschii F775_20638 I 0.892
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.891
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.891
OB04G32440 Oryza brachyantha OB04G32440 N 0.891
OPUNC06G22270 Oryza punctata OPUNC06G22270 N 0.891
e_gw1.140.53.1 Physcomitrella patens e_gw1.140.53.1 I 0.890
GRMZM2G162739 Zea mays GRMZM2G162739 I 0.890
Si022924m.g Setaria italica Si022924m.g I 0.889
Pavir.Ca02208 Panicum virgatum Pavir.Ca02208 I 0.889
Sb02g006680 Sorghum bicolor Sb02g006680 I 0.889
GRMZM2G079632 Zea mays GRMZM2G079632 I 0.889
Pavir.Cb00769 Panicum virgatum Pavir.Cb00769 I 0.889
Pavir.Ba02443 Panicum virgatum Pavir.Ba02443 I 0.889
TCM_035160 Theobroma cacao TCM_035160 I 0.886
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I 0.886
mgf013201m Mimulus guttatus mgf013201m I 0.886
Pavir.Ba03301 Panicum virgatum Pavir.Ba03301 I 0.885
GRMZM2G139700 Zea mays GRMZM2G139700 I 0.885
GRMZM2G083347 Zea mays GRMZM2G083347 I 0.884
Pavir.Fb00532 Panicum virgatum Pavir.Fb00532 N 0.884
LPERR05G13140 Leersia perrieri LPERR05G13140 I 0.883
e_gw1.164.18.1 Physcomitrella patens e_gw1.164.18.1 I 0.883
Pavir.Bb00806 Panicum virgatum Pavir.Bb00806 I 0.883
LPERR07G06440 Leersia perrieri LPERR07G06440 I 0.883
Gorai.005G088800 Gossypium raimondii Gorai.005G088800 I 0.883
Si030752m.g Setaria italica Si030752m.g I 0.882
ORUFI06G26420 Oryza rufipogon ORUFI06G26420 N 0.882
BGIOSGA023457 Oryza indica BGIOSGA023457 N 0.882
Solyc11g017470.1 Solanum lycopersicum Solyc11g017470.1 I 0.882
ONIVA02G35380 Oryza nivara ONIVA02G35380 N 0.882
OS06G0675600 Oryza sativa OS06G0675600 N 0.882
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.882
Cla011742 Citrullus lanatus Cla011742 I 0.882
anac032 Vitis vinifera VIT_18s0001g02300 I 0.882
OBART06G24550 Oryza barthii OBART06G24550 N 0.882
ORGLA06G0205600 Oryza glaberrima ORGLA06G0205600 N 0.882
OGLUM06G25850 Oryza glumaepatula OGLUM06G25850 N 0.882
OMERI06G24740 Oryza meridionalis OMERI06G24740 N 0.881
BRADI2G03467 Brachypodium distachyon BRADI2G03467 I 0.880
Sb08g014060 Sorghum bicolor Sb08g014060 I 0.880
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.880
PGSC0003DMG400029593 Solanum tuberosum PGSC0003DMG400029593 I 0.879
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I 0.879
POPTR_0004s04920 Populus trichocarpa POPTR_0004s04920 I 0.877
Sb03g000330 Sorghum bicolor Sb03g000330 I 0.877
SELMODRAFT_69090 Selaginella moellendorffii SELMODRAFT_69090 I 0.876
OMERI04G25730 Oryza meridionalis OMERI04G25730 I 0.876
PK26157.1 Cannabis sativa PK26157.1 I 0.876
BRADI2G57100 Brachypodium distachyon BRADI2G57100 I 0.876
SELMODRAFT_71305 Selaginella moellendorffii SELMODRAFT_71305 I 0.876
BRADI4G07527 Brachypodium distachyon BRADI4G07527 I 0.876
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I 0.875
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I 0.875
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I 0.875
Carubv10009926m.g Capsella rubella Carubv10009926m.g I 0.875
Bo5g001100 Brassica oleracea Bo5g001100 I 0.875
Bra033239 Brassica rapa Bra033239 I 0.875
NAC002 Arabidopsis thaliana AT1G01720 D 0.875
F775_28813 Aegilops tauschii F775_28813 I 0.875
TRAES3BF002300010CFD_g Triticum aestivum TRAES3BF002300010CFD_g I 0.875
Solyc08g074300.2 Solanum lycopersicum Solyc08g074300.2 I 0.875
ATAF1 Arabidopsis lyrata scaffold_100066.1 I 0.875
GSMUA_Achr6G18720_001 Musa acuminata GSMUA_Achr6G18720_001 I 0.875
TRIUR3_14109 Triticum urartu TRIUR3_14109 I 0.875
MLOC_59162 Hordeum vulgare MLOC_59162 I 0.875
OBART01G39590 Oryza barthii OBART01G39590 I 0.874
OB05G24820 Oryza brachyantha OB05G24820 I 0.874
NAC48 Oryza sativa OS01G0884300 D 0.874
ONIVA01G44460 Oryza nivara ONIVA01G44460 I 0.874
ORGLA01G0334900 Oryza glaberrima ORGLA01G0334900 I 0.874
BGIOSGA000374 Oryza indica BGIOSGA000374 I 0.874
ORUFI01G42940 Oryza rufipogon ORUFI01G42940 I 0.874
Si022714m.g Setaria italica Si022714m.g I 0.874
OMERI01G36460 Oryza meridionalis OMERI01G36460 I 0.874
OGLUM01G43820 Oryza glumaepatula OGLUM01G43820 I 0.874
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.874
LPERR01G34090 Leersia perrieri LPERR01G34090 I 0.874
GLYMA14G24220 Glycine max GLYMA14G24220 I 0.874
LPERR05G13490 Leersia perrieri LPERR05G13490 I 0.874
OPUNC01G38300 Oryza punctata OPUNC01G38300 I 0.874
OB01G48340 Oryza brachyantha OB01G48340 I 0.874
Sb03g041920 Sorghum bicolor Sb03g041920 I 0.873
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.873
BGIOSGA019897 Oryza indica BGIOSGA019897 I 0.872
ORGLA05G0146600 Oryza glaberrima ORGLA05G0146600 I 0.872
ONIVA05G17670 Oryza nivara ONIVA05G17670 I 0.872
gw1.1.690.1 Physcomitrella patens gw1.1.690.1 I 0.872
GRMZM2G014653 Zea mays GRMZM2G014653 I 0.872
OGLUM05G17980 Oryza glumaepatula OGLUM05G17980 I 0.872
Si002413m.g Setaria italica Si002413m.g I 0.872
ONIVA12G11920 Oryza nivara ONIVA12G11920 I 0.871
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I 0.871
GSMUA_Achr9G10210_001 Musa acuminata GSMUA_Achr9G10210_001 N 0.871
ORUFI10G07040 Oryza rufipogon ORUFI10G07040 I 0.871
TCM_029796 Theobroma cacao TCM_029796 I 0.871
OS12G0477400 Oryza sativa OS12G0477400 I 0.871
OGLUM12G13410 Oryza glumaepatula OGLUM12G13410 I 0.871
OMERI12G08420 Oryza meridionalis OMERI12G08420 I 0.871
BGIOSGA037382 Oryza indica BGIOSGA037382 I 0.871