Pavir.Gb01850 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Gb01850 T298873_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC100
M02375_2.00
Arabidopsis thaliana
NBAMKNHWNN

NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH7239
0.883 0.781
ANAC100
M02377_2.00
Arabidopsis lyrata
DYACGYHANN

NNTDRCGTRH
PBM
Weirauch et al.(2014)
pTH9234
0.879 0.781
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA

TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.877 0.763
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG

CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.877 0.763
ANAC080
M02376_2.00
Arabidopsis lyrata
NBAMKNHWNN

NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH9230
0.871 0.781
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01850.1.p NAC/NAM 35 159
Pavir.Gb01850.2.p NAC/NAM 12 136
Pavir.Gb01850.3.p NAC/NAM 12 136

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_20638 Aegilops tauschii F775_20638 I 0.946
F775_26920 Aegilops tauschii F775_26920 N 0.875
F775_32832 Aegilops tauschii F775_32832 N 0.983
AMTR_s00010p00266320 Amborella trichopoda AMTR_s00010p00266320 I 0.881
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.962
Aquca_009_00966 Aquilegia coerulea Aquca_009_00966 I 0.895
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I 0.877
ANAC080 Arabidopsis lyrata fgenesh2_kg.6__736__AT5G07680.1 D 0.871
ANAC100 Arabidopsis lyrata fgenesh2_kg.8__2118__AT5G61430.1 D 0.879
NAC100 Arabidopsis thaliana AT5G61430 D 0.883
NAC098 Arabidopsis thaliana AT5G53950 D 0.877
Bostr.26833s0095 Boechera stricta Bostr.26833s0095 I 0.889
Bostr.25375s0002 Boechera stricta Bostr.25375s0002 I 0.879
Bostr.0556s0555 Boechera stricta Bostr.0556s0555 I 0.967
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I 0.877
BRADI3G46900 Brachypodium distachyon BRADI3G46900 I 0.973
BRADI5G12407 Brachypodium distachyon BRADI5G12407 I 0.912
Bo7g098620 Brassica oleracea Bo7g098620 I 0.879
Bo00578s090 Brassica oleracea Bo00578s090 I 0.871
Bo9g113820 Brassica oleracea Bo9g113820 I 0.877
Bo2g043280 Brassica oleracea Bo2g043280 I 0.884
Bo2g008760 Brassica oleracea Bo2g008760 I 0.871
Bo2g161570 Brassica oleracea Bo2g161570 I 0.876
Bo6g062160 Brassica oleracea Bo6g062160 I 0.873
Bo5g002810 Brassica oleracea Bo5g002810 I 0.885
Bra012960 Brassica rapa Bra012960 I 0.879
Bra029313 Brassica rapa Bra029313 I 0.879
Bra025658 Brassica rapa Bra025658 I 0.871
Bra022685 Brassica rapa Bra022685 I 0.884
PK13860.1 Cannabis sativa PK13860.1 I 0.872
Cagra.27691s0001 Capsella grandiflora Cagra.27691s0001 I 0.964
Cagra.0542s0037 Capsella grandiflora Cagra.0542s0037 I 0.879
Cagra.1968s0045 Capsella grandiflora Cagra.1968s0045 I 0.881
Cagra.2925s0018 Capsella grandiflora Cagra.2925s0018 I 0.871
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I 0.877
Carubv10001372m.g Capsella rubella Carubv10001372m.g I 0.871
Carubv10017737m.g Capsella rubella Carubv10017737m.g I 0.872
Carubv10028330m.g Capsella rubella Carubv10028330m.g I 0.877
Carubv10009451m.g Capsella rubella Carubv10009451m.g I 0.877
Carubv10009049m.g Capsella rubella Carubv10009049m.g I 0.881
Carubv10026752m.g Capsella rubella Carubv10026752m.g I 0.879
evm.TU.supercontig_131.88 Carica papaya evm.TU.supercontig_131.88 I 0.874
evm.TU.supercontig_111.22 Carica papaya evm.TU.supercontig_111.22 I 0.872
Ca_22370 Cicer arietinum Ca_22370 I 0.872
Cla017258 Citrullus lanatus Cla017258 I 0.873
Cla010484 Citrullus lanatus Cla010484 I 0.903
Ciclev10012093m.g Citrus clementina Ciclev10012093m.g I 0.879
orange1.1g018950m.g Citrus sinensis orange1.1g018950m.g I 0.879
Eucgr.B00529 Eucalyptus grandis Eucgr.B00529 I 0.880
Thhalv10004550m.g Eutrema salsugineum Thhalv10004550m.g I 0.882
Thhalv10012158m.g Eutrema salsugineum Thhalv10012158m.g I 0.872
Thhalv10014081m.g Eutrema salsugineum Thhalv10014081m.g I 0.871
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I 0.877
GLYMA13G05540 Glycine max GLYMA13G05540 I 0.871
GLYMA06G21020 Glycine max GLYMA06G21020 I 0.881
GLYMA17G10970 Glycine max GLYMA17G10970 I 0.878
GLYMA18G49620 Glycine max GLYMA18G49620 I 0.889
GLYMA05G00930 Glycine max GLYMA05G00930 I 0.889
GLYMA09G37050 Glycine max GLYMA09G37050 I 0.884
GLYMA04G33270 Glycine max GLYMA04G33270 I 0.883
Gorai.002G067300 Gossypium raimondii Gorai.002G067300 I 0.874
Gorai.007G079900 Gossypium raimondii Gorai.007G079900 I 0.872
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I 0.881
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.950
MLOC_53744 Hordeum vulgare MLOC_53744 N 0.887
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.946
MLOC_65714 Hordeum vulgare MLOC_65714 N 0.937
LPERR06G20430 Leersia perrieri LPERR06G20430 N 0.878
LPERR06G12840 Leersia perrieri LPERR06G12840 I 0.873
LPERR02G17680 Leersia perrieri LPERR02G17680 N 0.978
LPERR04G11740 Leersia perrieri LPERR04G11740 I 0.991
LPERR01G00270 Leersia perrieri LPERR01G00270 I 0.938
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.957
Lus10041924.g Linum usitatissimum Lus10041924.g I 0.873
Lus10005537.g Linum usitatissimum Lus10005537.g I 0.873
MDP0000232050 Malus domestica MDP0000232050 I 0.874
MDP0000310981 Malus domestica MDP0000310981 I 0.874
MDP0000129335 Malus domestica MDP0000129335 I 0.874
cassava27052.m1 Manihot esculenta cassava27052.m1 I 0.877
cassava44869.m1 Manihot esculenta cassava44869.m1 I 0.874
MTR_1g008740 Medicago truncatula MTR_1g008740 I 0.922
mgf002183m Mimulus guttatus mgf002183m I 0.909
mgf015836m Mimulus guttatus mgf015836m I 0.890
GSMUA_Achr7G23250_001 Musa acuminata GSMUA_Achr7G23250_001 I 0.914
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.888
OBART01G16620 Oryza barthii OBART01G16620 I 0.924
OBART06G13940 Oryza barthii OBART06G13940 I 0.873
OBART04G14970 Oryza barthii OBART04G14970 I 0.993
OBART01G00360 Oryza barthii OBART01G00360 I 0.924
OBART02G21850 Oryza barthii OBART02G21850 I 0.976
OB02G29280 Oryza brachyantha OB02G29280 N 0.981
OB01G10300 Oryza brachyantha OB01G10300 I 0.927
OB06G22100 Oryza brachyantha OB06G22100 I 0.873
OB04G22290 Oryza brachyantha OB04G22290 I 0.932
ORGLA12G0187900 Oryza glaberrima ORGLA12G0187900 I 0.924
ORGLA04G0119700 Oryza glaberrima ORGLA04G0119700 I 0.993
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.954
ORGLA04G0270600 Oryza glaberrima ORGLA04G0270600 I 0.898
ORGLA06G0124600 Oryza glaberrima ORGLA06G0124600 I 0.873
OGLUM04G14830 Oryza glumaepatula OGLUM04G14830 I 0.993
OGLUM01G19440 Oryza glumaepatula OGLUM01G19440 I 0.924
OGLUM01G00350 Oryza glumaepatula OGLUM01G00350 I 0.924
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.954
OGLUM06G14810 Oryza glumaepatula OGLUM06G14810 I 0.873
OGLUM04G30580 Oryza glumaepatula OGLUM04G30580 I 0.898
OGLUM02G22030 Oryza glumaepatula OGLUM02G22030 I 0.976
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.950
BGIOSGA016546 Oryza indica BGIOSGA016546 I 0.993
BGIOSGA014034 Oryza indica BGIOSGA014034 I 0.898
BGIOSGA008492 Oryza indica BGIOSGA008492 I 0.976
BGIOSGA002597 Oryza indica BGIOSGA002597 I 0.924
BGIOSGA022861 Oryza indica BGIOSGA022861 I 0.873
BGIOSGA001578 Oryza indica BGIOSGA001578 I 0.924
OLONG_010248 Oryza longistaminata OLONG_010248 N 0.874
OLONG_023103 Oryza longistaminata OLONG_023103 I 0.936
OLONG_008218 Oryza longistaminata OLONG_008218 I 0.987
OLONG_022415 Oryza longistaminata OLONG_022415 I 0.924
OLONG_019251 Oryza longistaminata OLONG_019251 I 0.873
OMERI02G21390 Oryza meridionalis OMERI02G21390 I 0.976
OMERI01G15210 Oryza meridionalis OMERI01G15210 I 0.920
OMERI01G15230 Oryza meridionalis OMERI01G15230 I 0.924
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.950
ONIVA04G29890 Oryza nivara ONIVA04G29890 I 0.898
ONIVA04G13100 Oryza nivara ONIVA04G13100 I 0.993
ONIVA02G24080 Oryza nivara ONIVA02G24080 I 0.976
ONIVA01G18370 Oryza nivara ONIVA01G18370 I 0.924
ONIVA01G00280 Oryza nivara ONIVA01G00280 I 0.924
ONIVA03G33370 Oryza nivara ONIVA03G33370 I 0.873
OPUNC01G00320 Oryza punctata OPUNC01G00320 I 0.929
OPUNC04G12870 Oryza punctata OPUNC04G12870 I 0.944
OPUNC06G13130 Oryza punctata OPUNC06G13130 I 0.873
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.950
ORUFI04G16370 Oryza rufipogon ORUFI04G16370 I 0.993
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.954
ORUFI02G22930 Oryza rufipogon ORUFI02G22930 I 0.976
ORUFI04G32410 Oryza rufipogon ORUFI04G32410 I 0.898
ORUFI01G00320 Oryza rufipogon ORUFI01G00320 I 0.924
ORUFI01G18470 Oryza rufipogon ORUFI01G18470 I 0.924
ORUFI06G14810 Oryza rufipogon ORUFI06G14810 I 0.873
OS01G0393100 Oryza sativa OS01G0393100 I 0.924
OS08G0511200 Oryza sativa OS08G0511200 I 0.954
OS01G0104500 Oryza sativa OS01G0104500 I 0.927
OS06G0344900 Oryza sativa OS06G0344900 I 0.873
OS04G0460600 Oryza sativa OS04G0460600 I 0.993
OS02G0579000 Oryza sativa OS02G0579000 I 0.976
OS04G0691300 Oryza sativa OS04G0691300 I 0.898
Pavir.Db00380 Panicum virgatum Pavir.Db00380 N 0.871
Pavir.J24971 Panicum virgatum Pavir.J24971 N 0.966
Pavir.J04049 Panicum virgatum Pavir.J04049 I 0.890
Pavir.J23199 Panicum virgatum Pavir.J23199 I 0.944
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.875
e_gw1.259.32.1 Physcomitrella patens e_gw1.259.32.1 I 0.933
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I 0.874
Pm011397 Prunus mume Pm011397 I 0.874
Pm028711 Prunus mume Pm028711 I 0.878
Pm024887 Prunus mume Pm024887 I 0.872
PRUPE_ppa007653mg Prunus persica PRUPE_ppa007653mg I 0.872
PRUPE_ppa026810mg Prunus persica PRUPE_ppa026810mg I 0.874
PRUPE_ppa022384mg Prunus persica PRUPE_ppa022384mg I 0.878
27950.m000105 Ricinus communis 27950.m000105 I 0.874
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I 0.874
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I 0.874
SELMODRAFT_71307 Selaginella moellendorffii SELMODRAFT_71307 I 0.891
SELMODRAFT_86855 Selaginella moellendorffii SELMODRAFT_86855 I 0.891
Si006975m.g Setaria italica Si006975m.g N 0.874
Si017567m.g Setaria italica Si017567m.g N 0.979
Si010553m.g Setaria italica Si010553m.g I 0.992
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I 0.874
Solyc08g074300.2 Solanum lycopersicum Solyc08g074300.2 I 0.938
PGSC0003DMG400029593 Solanum tuberosum PGSC0003DMG400029593 I 0.939
PGSC0003DMG400009920 Solanum tuberosum PGSC0003DMG400009920 I 0.952
Sb04g023990 Sorghum bicolor Sb04g023990 N 0.955
Sb06g019010 Sorghum bicolor Sb06g019010 I 0.993
Sb09g008000 Sorghum bicolor Sb09g008000 N 0.905
TCM_031619 Theobroma cacao TCM_031619 I 0.874
Traes_7AL_BE3253C8F Triticum aestivum Traes_7AL_BE3253C8F N 0.883
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.946
Traes_2DL_DF7B995C9 Triticum aestivum Traes_2DL_DF7B995C9 N 0.983
Traes_2BL_6AEE8AC28 Triticum aestivum Traes_2BL_6AEE8AC28 N 0.983
Traes_2AL_57BF37A86 Triticum aestivum Traes_2AL_57BF37A86 N 0.982
TRIUR3_03895 Triticum urartu TRIUR3_03895 N 0.883
TRIUR3_09915 Triticum urartu TRIUR3_09915 N 0.983
GRMZM5G898290 Zea mays GRMZM5G898290 N 0.979
GRMZM2G139700 Zea mays GRMZM2G139700 I 0.948
GRMZM2G009892 Zea mays GRMZM2G009892 I 0.990