CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ib02435
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.Ib02435
T298909_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac071
M07219_2.00
Arabidopsis thaliana
CTTSHNNYHCAMGYW
WRCKTGDRNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC071_col_a
0.896
0.780
anac071
M07220_2.00
Arabidopsis thaliana
CTTSHNNNNSAMGYA
TRCKTSNNNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC071_colamp_a
0.896
0.780
anac096
M07237_2.00
Arabidopsis thaliana
CTTSHNNNNBAMGHAAYC
GRTTDCKTVNNNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC096_colamp_a
0.892
0.706
anac096
M07238_2.00
Arabidopsis thaliana
TTNCTTSWNNHNYAMG
CKTRNDNNWSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC096_col
0.892
0.706
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ib02435.1.p
NAC/NAM
7
134
PPGFRFHPTDDELVGYYLKRKVDNLKIELEVIPVIDLYKSEPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATATGYWKATGKDRRIACDGGGVYGLRKTLVFYRGRAPGGERTDWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
75 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si036301m.g
Setaria italica
Si036301m.g
I
0.959
Pavir.Ia03491
Panicum virgatum
Pavir.Ia03491
I
0.959
Sb01g028450
Sorghum bicolor
Sb01g028450
I
0.958
GRMZM2G082709
Zea mays
GRMZM2G082709
I
0.957
LPERR10G15090
Leersia perrieri
LPERR10G15090
I
0.951
BRADI3G33957
Brachypodium distachyon
BRADI3G33957
I
0.949
OGLUM10G19330
Oryza glumaepatula
OGLUM10G19330
I
0.948
OBART10G19230
Oryza barthii
OBART10G19230
I
0.948
OMERI07G08100
Oryza meridionalis
OMERI07G08100
I
0.948
BGIOSGA033482
Oryza indica
BGIOSGA033482
I
0.948
ORUFI10G20470
Oryza rufipogon
ORUFI10G20470
I
0.948
OLONG_018722
Oryza longistaminata
OLONG_018722
I
0.948
ORGLA10G0144100
Oryza glaberrima
ORGLA10G0144100
I
0.948
ONIVA10G21790
Oryza nivara
ONIVA10G21790
I
0.948
OPUNC10G17630
Oryza punctata
OPUNC10G17630
I
0.948
MLOC_58950
Hordeum vulgare
MLOC_58950
I
0.947
Traes_1BL_8925B27BC
Triticum aestivum
Traes_1BL_8925B27BC
I
0.947
Traes_1AL_D6C49C3BC
Triticum aestivum
Traes_1AL_D6C49C3BC
I
0.947
F775_28577
Aegilops tauschii
F775_28577
I
0.947
OB10G26350
Oryza brachyantha
OB10G26350
I
0.946
TRIUR3_22131
Triticum urartu
TRIUR3_22131
I
0.938
orange1.1g018835m.g
Citrus sinensis
orange1.1g018835m.g
I
0.933
Ciclev10031966m.g
Citrus clementina
Ciclev10031966m.g
I
0.933
GLYMA05G23840
Glycine max
GLYMA05G23840
I
0.928
Lus10035373.g
Linum usitatissimum
Lus10035373.g
I
0.927
POPTR_0003s08830
Populus trichocarpa
POPTR_0003s08830
I
0.927
Cucsa.313350
Cucumis sativus
Cucsa.313350
I
0.927
SapurV1A.0846s0080
Salix purpurea
SapurV1A.0846s0080
I
0.926
Cla016424
Citrullus lanatus
Cla016424
I
0.926
cassava22941.valid.m1
Manihot esculenta
cassava22941.valid.m1
I
0.926
Solyc08g077110.2
Solanum lycopersicum
Solyc08g077110.2
I
0.925
GLYMA17G16500
Glycine max
GLYMA17G16500
I
0.925
MDP0000936269
Malus domestica
MDP0000936269
I
0.924
29827.m002555
Ricinus communis
29827.m002555
I
0.924
gene10722-v1.0-hybrid
Fragaria vesca
gene10722-v1.0-hybrid
I
0.924
Lus10030978.g
Linum usitatissimum
Lus10030978.g
I
0.923
Eucgr.E00298
Eucalyptus grandis
Eucgr.E00298
I
0.923
Gorai.004G186700
Gossypium raimondii
Gorai.004G186700
I
0.922
evm.TU.supercontig_90.52
Carica papaya
evm.TU.supercontig_90.52
I
0.921
Carubv10007390m.g
Capsella rubella
Carubv10007390m.g
I
0.921
VIT_02s0012g01040
Vitis vinifera
VIT_02s0012g01040
I
0.919
PRUPE_ppa007828mg
Prunus persica
PRUPE_ppa007828mg
I
0.918
Pm023277
Prunus mume
Pm023277
I
0.918
PGSC0003DMG400017505
Solanum tuberosum
PGSC0003DMG400017505
I
0.917
PK00339.1
Cannabis sativa
PK00339.1
I
0.917
anac096
Arabidopsis lyrata
fgenesh2_kg.8__135__AT5G46590.1
I
0.915
POPTR_0001s02710
Populus trichocarpa
POPTR_0001s02710
I
0.913
Ca_12837
Cicer arietinum
Ca_12837
I
0.913
MTR_5g014300
Medicago truncatula
MTR_5g014300
I
0.911
Carubv10028284m.g
Capsella rubella
Carubv10028284m.g
I
0.911
Cagra.0569s0030
Capsella grandiflora
Cagra.0569s0030
I
0.911
GSMUA_Achr5G03360_001
Musa acuminata
GSMUA_Achr5G03360_001
I
0.910
GSMUA_Achr11G17780_001
Musa acuminata
GSMUA_Achr11G17780_001
I
0.910
Traes_1DL_A556D8590
Triticum aestivum
Traes_1DL_A556D8590
N
0.907
SapurV1A.0900s0060
Salix purpurea
SapurV1A.0900s0060
I
0.906
anac071
Arabidopsis lyrata
Al_scaffold_0007_2395
I
0.906
Thhalv10001200m.g
Eutrema salsugineum
Thhalv10001200m.g
I
0.906
Bo7g075540
Brassica oleracea
Bo7g075540
I
0.906
Bra025012
Brassica rapa
Bra025012
I
0.906
Gorai.008G227800
Gossypium raimondii
Gorai.008G227800
I
0.905
Bostr.30275s0267
Boechera stricta
Bostr.30275s0267
I
0.905
Ca_02274
Cicer arietinum
Ca_02274
I
0.905
Bra022046
Brassica rapa
Bra022046
I
0.904
Eucgr.D02182
Eucalyptus grandis
Eucgr.D02182
I
0.904
Gorai.007G031300
Gossypium raimondii
Gorai.007G031300
I
0.904
Cagra.3356s0092
Capsella grandiflora
Cagra.3356s0092
I
0.900
Bo7g105630
Brassica oleracea
Bo7g105630
I
0.900
anac071
Arabidopsis thaliana
AT4G17980
D
0.896
anac096
Arabidopsis thaliana
AT5G46590
D
0.892
Bra012626
Brassica rapa
Bra012626
I
0.890
Gorai.003G180600
Gossypium raimondii
Gorai.003G180600
I
0.890
Bo2g130240
Brassica oleracea
Bo2g130240
I
0.889
Solyc06g061080.2
Solanum lycopersicum
Solyc06g061080.2
I
0.887
TCM_015749
Theobroma cacao
TCM_015749
I
0.881
mgf019012m
Mimulus guttatus
mgf019012m
I
0.875