Pavir.Ib03976 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Ib03976 T298915_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
anac058
M00886_2.00
Arabidopsis thaliana
CGTTGTCT

AGACAACG
PBM
Franco-Zorrilla et al.(2014)
ANAC58
0.943 0.825
anac058
M07210_2.00
Arabidopsis thaliana
CKTGHNNNRCAMGYWA

TWRCKTGYNNNDCAMG
Dap-seq
OMalley et al.(2016)
ANAC058_col_a
0.943 0.825
anac058
M07211_2.00
Arabidopsis thaliana
TDCKTGHNNNDCAMGHHA

TDDCKTGHNNNDCAMGHA
Dap-seq
OMalley et al.(2016)
ANAC058_colamp_a
0.943 0.825
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA

TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.896 0.798
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG

CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.896 0.798
ANAC038
M07188_2.00
Arabidopsis thaliana
DNCKTRHNNHDCAMGYWA

TWRCKTGHDNNDYAMGNH
Dap-seq
OMalley et al.(2016)
ANAC038_col_a
0.883 0.781
ANAC038
M07189_2.00
Arabidopsis thaliana
TTDCTTGWNNHDYAMGHHAHH

DDTDDCKTRHDNNWCAAGHAA
Dap-seq
OMalley et al.(2016)
ANAC038_colamp_a
0.883 0.781
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib03976.1.p NAC/NAM 7 131

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ia01262 Panicum virgatum Pavir.Ia01262 I 0.972
Sb01g014310 Sorghum bicolor Sb01g014310 I 0.971
Si036535m.g Setaria italica Si036535m.g I 0.969
OB03G34470 Oryza brachyantha OB03G34470 I 0.967
OPUNC03G24220 Oryza punctata OPUNC03G24220 I 0.966
ONIVA03G27500 Oryza nivara ONIVA03G27500 I 0.964
ORGLA03G0246300 Oryza glaberrima ORGLA03G0246300 I 0.964
OBART03G26480 Oryza barthii OBART03G26480 I 0.964
ORUFI03G27440 Oryza rufipogon ORUFI03G27440 I 0.964
OMERI03G23890 Oryza meridionalis OMERI03G23890 I 0.964
OGLUM03G27330 Oryza glumaepatula OGLUM03G27330 I 0.964
OS03G0624600 Oryza sativa OS03G0624600 I 0.964
BGIOSGA013151 Oryza indica BGIOSGA013151 I 0.964
LPERR03G21900 Leersia perrieri LPERR03G21900 I 0.963
BRADI1G14467 Brachypodium distachyon BRADI1G14467 I 0.956
Traes_4AL_B44DF4ACC Triticum aestivum Traes_4AL_B44DF4ACC I 0.956
TRIUR3_27612 Triticum urartu TRIUR3_27612 I 0.956
F775_05949 Aegilops tauschii F775_05949 I 0.956
MLOC_68284 Hordeum vulgare MLOC_68284 I 0.955
Aquca_026_00305 Aquilegia coerulea Aquca_026_00305 I 0.955
Traes_4BS_373BDBA94 Triticum aestivum Traes_4BS_373BDBA94 I 0.955
GSMUA_Achr10G19900_001 Musa acuminata GSMUA_Achr10G19900_001 I 0.955
mgf021065m Mimulus guttatus mgf021065m I 0.954
SapurV1A.1146s0010 Salix purpurea SapurV1A.1146s0010 I 0.952
Ciclev10023578m.g Citrus clementina Ciclev10023578m.g I 0.950
POPTR_0012s05280 Populus trichocarpa POPTR_0012s05280 I 0.950
POPTR_0015s03700 Populus trichocarpa POPTR_0015s03700 I 0.950
MDP0000153949 Malus domestica MDP0000153949 I 0.949
MDP0000246482 Malus domestica MDP0000246482 I 0.949
cassava9086.m1 Manihot esculenta cassava9086.m1 I 0.949
Carubv10015990m.g Capsella rubella Carubv10015990m.g I 0.948
Eucgr.B00724 Eucalyptus grandis Eucgr.B00724 I 0.948
SapurV1A.1381s0060 Salix purpurea SapurV1A.1381s0060 I 0.948
SapurV1A.1381s0050 Salix purpurea SapurV1A.1381s0050 I 0.948
SapurV1A.0719s0060 Salix purpurea SapurV1A.0719s0060 I 0.947
29974.m000235 Ricinus communis 29974.m000235 I 0.945
anac058 Vitis vinifera VIT_17s0000g03660 I 0.944
Thhalv10021200m.g Eutrema salsugineum Thhalv10021200m.g I 0.944
evm.TU.supercontig_3.509 Carica papaya evm.TU.supercontig_3.509 I 0.944
Bostr.19424s0822 Boechera stricta Bostr.19424s0822 I 0.944
anac058 Arabidopsis thaliana AT3G18400 D 0.943
anac058 Arabidopsis lyrata Al_scaffold_0003_1942 I 0.943
Gorai.006G060900 Gossypium raimondii Gorai.006G060900 I 0.943
Bra022319 Brassica rapa Bra022319 I 0.942
Bra001705 Brassica rapa Bra001705 I 0.942
Bo3g071500 Brassica oleracea Bo3g071500 I 0.942
Bo01320s020 Brassica oleracea Bo01320s020 I 0.942
TCM_012350 Theobroma cacao TCM_012350 I 0.942
GSMUA_Achr8G18420_001 Musa acuminata GSMUA_Achr8G18420_001 I 0.941
Cagra.1681s0009 Capsella grandiflora Cagra.1681s0009 I 0.941
Solyc12g036480.1 Solanum lycopersicum Solyc12g036480.1 I 0.940
Eucgr.K02225 Eucalyptus grandis Eucgr.K02225 I 0.940
AMTR_s00079p00099620 Amborella trichopoda AMTR_s00079p00099620 I 0.939
cassava2919.m1 Manihot esculenta cassava2919.m1 I 0.939
Bo1g117610 Brassica oleracea Bo1g117610 I 0.935
PGSC0003DMG400005384 Solanum tuberosum PGSC0003DMG400005384 I 0.935
Bostr.26675s0262 Boechera stricta Bostr.26675s0262 I 0.935
Bra037585 Brassica rapa Bra037585 I 0.935
Bra003023 Brassica rapa Bra003023 I 0.933
Thhalv10011708m.g Eutrema salsugineum Thhalv10011708m.g I 0.933
cassava18338.valid.m1 Manihot esculenta cassava18338.valid.m1 I 0.931
PGSC0003DMG400028779 Solanum tuberosum PGSC0003DMG400028779 I 0.931
Ciclev10008885m.g Citrus clementina Ciclev10008885m.g I 0.931
orange1.1g037591m.g Citrus sinensis orange1.1g037591m.g I 0.931
Gorai.010G124100 Gossypium raimondii Gorai.010G124100 I 0.931
Lus10027227.g Linum usitatissimum Lus10027227.g I 0.931
TCM_036791 Theobroma cacao TCM_036791 I 0.931
ANAC039 Vitis vinifera VIT_04s0008g02710 I 0.929
Lus10038937.g Linum usitatissimum Lus10038937.g I 0.929
POPTR_0018s03910 Populus trichocarpa POPTR_0018s03910 I 0.928
SapurV1A.1363s0020 Salix purpurea SapurV1A.1363s0020 I 0.928
Solyc06g069100.1 Solanum lycopersicum Solyc06g069100.1 I 0.928
SapurV1A.1285s0100 Salix purpurea SapurV1A.1285s0100 I 0.928
POPTR_0006s29180 Populus trichocarpa POPTR_0006s29180 I 0.927
GSMUA_Achr7G19680_001 Musa acuminata GSMUA_Achr7G19680_001 I 0.926
mgf025158m Mimulus guttatus mgf025158m I 0.925
SapurV1A.0263s0310 Salix purpurea SapurV1A.0263s0310 I 0.923
Pm005091 Prunus mume Pm005091 I 0.923
PRUPE_ppa025916mg Prunus persica PRUPE_ppa025916mg I 0.923
Aquca_018_00116 Aquilegia coerulea Aquca_018_00116 I 0.923
MDP0000232008 Malus domestica MDP0000232008 I 0.922
28226.m000851 Ricinus communis 28226.m000851 I 0.922
evm.TU.supercontig_244.7 Carica papaya evm.TU.supercontig_244.7 I 0.922
MDP0000690168 Malus domestica MDP0000690168 I 0.922
Lus10009669.g Linum usitatissimum Lus10009669.g I 0.920
GLYMA04G08320 Glycine max GLYMA04G08320 I 0.920
GLYMA06G08440 Glycine max GLYMA06G08440 I 0.920
chr1.LjT35C22.60.nc Lotus japonicus chr1.LjT35C22.60.nc I 0.920
Lus10009029.g Linum usitatissimum Lus10009029.g I 0.919
gene08765-v1.0-hybrid Fragaria vesca gene08765-v1.0-hybrid I 0.918
Lus10026966.g Linum usitatissimum Lus10026966.g I 0.917
Lus10020165.g Linum usitatissimum Lus10020165.g I 0.916
SapurV1A.0346s0160 Salix purpurea SapurV1A.0346s0160 I 0.914
MTR_3g109340 Medicago truncatula MTR_3g109340 I 0.913
cassava17517.valid.m1 Manihot esculenta cassava17517.valid.m1 I 0.912
30138.m004055 Ricinus communis 30138.m004055 I 0.912
POPTR_0012s01610 Populus trichocarpa POPTR_0012s01610 I 0.911
SapurV1A.0377s0130 Salix purpurea SapurV1A.0377s0130 I 0.911
Cucsa.161510 Cucumis sativus Cucsa.161510 I 0.911
Cla022572 Citrullus lanatus Cla022572 I 0.911
Ciclev10020480m.g Citrus clementina Ciclev10020480m.g I 0.911
orange1.1g017827m.g Citrus sinensis orange1.1g017827m.g I 0.911
POPTR_0015s02170 Populus trichocarpa POPTR_0015s02170 I 0.910
PK02366.1 Cannabis sativa PK02366.1 I 0.909
MTR_4g108760 Medicago truncatula MTR_4g108760 I 0.908
mgf021404m Mimulus guttatus mgf021404m I 0.907
gene26043-v1.0-hybrid Fragaria vesca gene26043-v1.0-hybrid I 0.906
Eucgr.C02105 Eucalyptus grandis Eucgr.C02105 I 0.906
Lus10001648.g Linum usitatissimum Lus10001648.g I 0.906
Lus10021659.g Linum usitatissimum Lus10021659.g I 0.906
AMTR_s00025p00174590 Amborella trichopoda AMTR_s00025p00174590 I 0.904
PGSC0003DMG400014845 Solanum tuberosum PGSC0003DMG400014845 I 0.903
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I 0.902
GLYMA14G20276 Glycine max GLYMA14G20276 I 0.902
Bo9g113820 Brassica oleracea Bo9g113820 I 0.901
Solyc03g115850.2 Solanum lycopersicum Solyc03g115850.2 I 0.901
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I 0.901
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I 0.899
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I 0.899
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I 0.899
cassava46147.m1 Manihot esculenta cassava46147.m1 I 0.898
PGSC0003DMG400019523 Solanum tuberosum PGSC0003DMG400019523 I 0.897
mgf003818m Mimulus guttatus mgf003818m I 0.897
NAC098 Arabidopsis thaliana AT5G53950 D 0.896
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I 0.896
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I 0.896
Carubv10028330m.g Capsella rubella Carubv10028330m.g I 0.896
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I 0.896
Solyc06g069710.2 Solanum lycopersicum Solyc06g069710.2 I 0.894
Cla019391 Citrullus lanatus Cla019391 I 0.894
Solyc08g006020.2 Solanum lycopersicum Solyc08g006020.2 I 0.893
PGSC0003DMG400033047 Solanum tuberosum PGSC0003DMG400033047 I 0.893
Cucsa.197830 Cucumis sativus Cucsa.197830 I 0.893
MTR_1g008740 Medicago truncatula MTR_1g008740 I 0.890
Ciclev10008619m.g Citrus clementina Ciclev10008619m.g I 0.890
orange1.1g047710m.g Citrus sinensis orange1.1g047710m.g I 0.890
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I 0.889
Pm011397 Prunus mume Pm011397 I 0.889
cassava44869.m1 Manihot esculenta cassava44869.m1 I 0.889
POPTR_0001s40680 Populus trichocarpa POPTR_0001s40680 I 0.889
SapurV1A.0207s0120 Salix purpurea SapurV1A.0207s0120 I 0.889
MDP0000310981 Malus domestica MDP0000310981 I 0.889
PRUPE_ppa026810mg Prunus persica PRUPE_ppa026810mg I 0.889
Gorai.002G067300 Gossypium raimondii Gorai.002G067300 I 0.887
evm.TU.supercontig_131.88 Carica papaya evm.TU.supercontig_131.88 I 0.887
TCM_031619 Theobroma cacao TCM_031619 I 0.887
27950.m000105 Ricinus communis 27950.m000105 I 0.887
ONIVA03G33370 Oryza nivara ONIVA03G33370 I 0.886
OLONG_019251 Oryza longistaminata OLONG_019251 I 0.886
Lus10005537.g Linum usitatissimum Lus10005537.g I 0.886
Bo2g043280 Brassica oleracea Bo2g043280 I 0.886
OPUNC06G13130 Oryza punctata OPUNC06G13130 I 0.886
ORGLA06G0124600 Oryza glaberrima ORGLA06G0124600 I 0.886
Bra022685 Brassica rapa Bra022685 I 0.886
ORUFI06G14810 Oryza rufipogon ORUFI06G14810 I 0.886
OS06G0344900 Oryza sativa OS06G0344900 I 0.886
BGIOSGA022861 Oryza indica BGIOSGA022861 I 0.886
OGLUM06G14810 Oryza glumaepatula OGLUM06G14810 I 0.886
OB06G22100 Oryza brachyantha OB06G22100 I 0.886
OBART06G13940 Oryza barthii OBART06G13940 I 0.886
chr4.CM0087.800.nd Lotus japonicus chr4.CM0087.800.nd I 0.886
Lus10041924.g Linum usitatissimum Lus10041924.g I 0.886
Thhalv10000520m.g Eutrema salsugineum Thhalv10000520m.g I 0.885
LPERR06G12840 Leersia perrieri LPERR06G12840 I 0.885
chr3.CM0282.730.nc Lotus japonicus chr3.CM0282.730.nc I 0.884
AMTR_s00058p00136280 Amborella trichopoda AMTR_s00058p00136280 I 0.884
PRUPE_ppa007653mg Prunus persica PRUPE_ppa007653mg I 0.884
PDK_20s1323531g003 Phoenix dactylifera PDK_20s1323531g003 I 0.884
GSMUA_Achr10G22350_001 Musa acuminata GSMUA_Achr10G22350_001 I 0.884
MTR_2g078700 Medicago truncatula MTR_2g078700 I 0.884
Bra032095 Brassica rapa Bra032095 I 0.883
ANAC039 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4000352 I 0.883
MDP0000135860 Malus domestica MDP0000135860 I 0.883
gene25163-v1.0-hybrid Fragaria vesca gene25163-v1.0-hybrid I 0.883
Bra007855 Brassica rapa Bra007855 I 0.883
Cagra.4091s0015 Capsella grandiflora Cagra.4091s0015 I 0.883
Bostr.27895s0039 Boechera stricta Bostr.27895s0039 I 0.883
ANAC038 Arabidopsis thaliana AT2G24430 D 0.883
Aquca_033_00035 Aquilegia coerulea Aquca_033_00035 I 0.883
Solyc08g074300.2 Solanum lycopersicum Solyc08g074300.2 I 0.883
Carubv10025508m.g Capsella rubella Carubv10025508m.g I 0.883
Bo8g099810 Brassica oleracea Bo8g099810 I 0.883
GSMUA_Achr10G05070_001 Musa acuminata GSMUA_Achr10G05070_001 I 0.882
Cla023717 Citrullus lanatus Cla023717 I 0.882
gene00971-v1.0-hybrid Fragaria vesca gene00971-v1.0-hybrid I 0.882
Gorai.013G171300 Gossypium raimondii Gorai.013G171300 I 0.882
Aquca_002_00662 Aquilegia coerulea Aquca_002_00662 I 0.882
Ca_22532 Cicer arietinum Ca_22532 I 0.882
VIT_19s0014g02200 Vitis vinifera VIT_19s0014g02200 I 0.881
Cucsa.122890 Cucumis sativus Cucsa.122890 I 0.881
GRMZM2G386163 Zea mays GRMZM2G386163 I 0.881
PGSC0003DMG400029593 Solanum tuberosum PGSC0003DMG400029593 I 0.880
BGIOSGA029508 Oryza indica BGIOSGA029508 I 0.879
LPERR09G11330 Leersia perrieri LPERR09G11330 I 0.879
Pavir.J02772 Panicum virgatum Pavir.J02772 I 0.879
OLONG_009674 Oryza longistaminata OLONG_009674 I 0.879
OS09G0497900 Oryza sativa OS09G0497900 I 0.879
ONIVA09G15800 Oryza nivara ONIVA09G15800 I 0.879
ORUFI09G16430 Oryza rufipogon ORUFI09G16430 I 0.879
ORGLA09G0117400 Oryza glaberrima ORGLA09G0117400 I 0.879
OPUNC09G13640 Oryza punctata OPUNC09G13640 I 0.879
OMERI07G04410 Oryza meridionalis OMERI07G04410 I 0.879
Si030187m.g Setaria italica Si030187m.g I 0.879
OGLUM09G15820 Oryza glumaepatula OGLUM09G15820 I 0.879
Sb02g028870 Sorghum bicolor Sb02g028870 I 0.879
OBART09G15220 Oryza barthii OBART09G15220 I 0.879
gene04424-v1.0-hybrid Fragaria vesca gene04424-v1.0-hybrid I 0.878
BRADI4G34157 Brachypodium distachyon BRADI4G34157 I 0.877
LjSGA_071377.1 Lotus japonicus LjSGA_071377.1 I 0.877
GLYMA07G10240 Glycine max GLYMA07G10240 I 0.877
MTR_3g435150 Medicago truncatula MTR_3g435150 I 0.876
Pm024887 Prunus mume Pm024887 I 0.876
cassava1758.valid.m1 Manihot esculenta cassava1758.valid.m1 I 0.876
TCM_014073 Theobroma cacao TCM_014073 I 0.875
GLYMA12G26190 Glycine max GLYMA12G26190 I 0.875
GLYMA06G35660 Glycine max GLYMA06G35660 I 0.875
28649.m000212 Ricinus communis 28649.m000212 I 0.875
GLYMA06G21020 Glycine max GLYMA06G21020 I 0.874
GSMUA_Achr8G21470_001 Musa acuminata GSMUA_Achr8G21470_001 I 0.873
cassava361.valid.m1 Manihot esculenta cassava361.valid.m1 I 0.873
cassava1757.valid.m1 Manihot esculenta cassava1757.valid.m1 I 0.872
F775_52293 Aegilops tauschii F775_52293 I 0.872
GLYMA17G10970 Glycine max GLYMA17G10970 I 0.872
GLYMA05G00930 Glycine max GLYMA05G00930 I 0.872
MLOC_68185 Hordeum vulgare MLOC_68185 I 0.872
TRIUR3_20591 Triticum urartu TRIUR3_20591 I 0.872