Pavir.J04559 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.J04559 T298933_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC073
M07221_2.00
Arabidopsis thaliana
CTTSWNNNWYAMGYH

DRCKTRWNNNWSAAG
Dap-seq
OMalley et al.(2016)
SND2_col_a
0.971 0.860
NAC073
M07222_2.00
Arabidopsis thaliana
CKTSWNNNWYACGYW

WRCGTRWNNNWSAMG
Dap-seq
OMalley et al.(2016)
SND2_colamp_a
0.971 0.860
PK27085.1
M01293_2.00
Cannabis sativa
AATTTATT

AATAAATT
PBM
Lambert et al.(2019)
pTH11262
0.952 0.746
anac075
M07223_2.00
Arabidopsis thaliana
CTTSWNNNWYAMGYT

ARCKTRWNNNWSAAG
Dap-seq
OMalley et al.(2016)
ANAC075_col_a
0.951 0.746
NAC010
M07167_2.00
Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH

DRWDDCKTRWNNNWSAAGNWWN
Dap-seq
OMalley et al.(2016)
SND3_colamp_a
0.944 0.746
NAC010
M07168_2.00
Arabidopsis thaliana
CKTSWNNNWYAMGYW

WRCKTRWNNNWSAMG
Dap-seq
OMalley et al.(2016)
SND3_col_b
0.944 0.746
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J04559.1.p NAC/NAM 63 217
Pavir.J04559.2.p NAC/NAM 63 206

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000003474 Ailuropoda melanoleuca ENSAMEG00000003474 I 0.000
ENSAMEG00000000780 Ailuropoda melanoleuca ENSAMEG00000000780 I 0.000
Alligator_sinensis_CCG016186.1 Alligator sinensis Alligator_sinensis_CCG016186.1 I 0.000
Aqu1.203623 Amphimedon queenslandica Aqu1.203623 I 0.000
Aqu1.213968 Amphimedon queenslandica Aqu1.213968 I 0.000
ENSAPLG00000012727 Anas platyrhynchos ENSAPLG00000012727 I 0.000
ENSACAG00000011930 Anolis carolinensis ENSACAG00000011930 I 0.000
LHX8 Anolis carolinensis ENSACAG00000011289 I 0.000
Afo_R000358 Aptenodytes forsteri Afo_R000358 I 0.000
Afo_R013768 Aptenodytes forsteri Afo_R013768 I 0.000
ENSAMXG00000021537 Astyanax mexicanus ENSAMXG00000021537 I 0.000
ENSAMXG00000019753 Astyanax mexicanus ENSAMXG00000019753 I 0.000
ENSAMXG00000011097 Astyanax mexicanus ENSAMXG00000011097 I 0.000
ENSAMXG00000013734 Astyanax mexicanus ENSAMXG00000013734 I 0.000
ENSAMXG00000016758 Astyanax mexicanus ENSAMXG00000016758 I 0.000
BGLB010522 Biomphalaria glabrata BGLB010522 I 0.000
ENSP00000377854-D1 Bos grunniens ENSP00000377854-D1 I 0.000
ENSBTAP00000025544-D1 Bos grunniens ENSBTAP00000025544-D1 I 0.000
LHX8 Bos taurus ENSBTAG00000019192 I 0.000
LHX6 Bos taurus ENSBTAG00000005525 I 0.000
Brh_R012136 Buceros rhinoceros Brh_R012136 I 0.000
LHX8 Callithrix jacchus ENSCJAG00000006569 I 0.000
LHX6 Callithrix jacchus ENSCJAG00000020122 I 0.000
LHX8 Canis familiaris ENSCAFG00000020401 I 0.000
LHX6 Canis familiaris ENSCAFG00000020277 I 0.000
LHX6 Cavia porcellus ENSCPOG00000010682 I 0.000
LHX8 Cavia porcellus ENSCPOG00000000893 I 0.000
Cmyd_10007230 Chelonia mydas Cmyd_10007230 I 0.000
ENSCSAG00000013360 Chlorocebus sabaeus ENSCSAG00000013360 I 0.000
ENSCSAG00000001388 Chlorocebus sabaeus ENSCSAG00000001388 I 0.000
LHX8 Choloepus hoffmanni ENSCHOG00000004170 I 0.000
en Ciona intestinalis ENSCING00000002157 I 0.000
ENSCSAVG00000008099 Ciona savignyi ENSCSAVG00000008099 I 0.000
ENSCSAVG00000010423 Ciona savignyi ENSCSAVG00000010423 I 0.000
lhx8b Danio rerio ENSDARG00000042145 I 0.000
lhx8a Danio rerio ENSDARG00000002330 I 0.000
lhx6 Danio rerio ENSDARG00000006896 I 0.000
mxtx2 Danio rerio ENSDARG00000015906 I 0.000
sebox Danio rerio ENSDARG00000042526 I 0.000
mxtx1 Danio rerio ENSDARG00000069382 I 0.000
LHX6 Dasypus novemcinctus ENSDNOG00000037531 I 0.000
LHX8 Dasypus novemcinctus ENSDNOG00000002579 I 0.000
ENSDORG00000015860 Dipodomys ordii ENSDORG00000015860 I 0.000
Lhx8 Dipodomys ordii ENSDORG00000000589 I 0.000
EmuJ_000380600 Echinococcus multilocularis EmuJ_000380600 I 0.000
LHX8 Echinops telfairi ENSETEG00000010400 I 0.000
EVEC_0001081301 Enterobius vermicularis EVEC_0001081301 I 0.000
EVEC_0001106101 Enterobius vermicularis EVEC_0001106101 I 0.000
LHX8 Equus caballus ENSECAG00000004881 I 0.000
LHX8 Erinaceus europaeus ENSEEUG00000012856 I 0.000
LHX6 Erinaceus europaeus ENSEEUG00000015531 I 0.000
LHX8 Felis catus ENSFCAG00000031609 I 0.000
LHX6 Felis catus ENSFCAG00000018842 I 0.000
ENSFALG00000001937 Ficedula albicollis ENSFALG00000001937 I 0.000
ENSFALG00000001164 Ficedula albicollis ENSFALG00000001164 I 0.000
ENSGMOG00000016250 Gadus morhua ENSGMOG00000016250 I 0.000
ENSGMOG00000013688 Gadus morhua ENSGMOG00000013688 I 0.000
ENSGMOG00000008220 Gadus morhua ENSGMOG00000008220 I 0.000
ENSGMOG00000001710 Gadus morhua ENSGMOG00000001710 I 0.000
ENSGMOG00000016580 Gadus morhua ENSGMOG00000016580 I 0.000
ENSGMOG00000018358 Gadus morhua ENSGMOG00000018358 I 0.000
LHX8 Gallus gallus ENSGALG00000011369 I 0.000
LHX6 Gallus gallus ENSGALG00000001347 I 0.000
lhx8b Gasterosteus aculeatus ENSGACG00000012028 I 0.000
si:ch211-236k19.2 Gasterosteus aculeatus ENSGACG00000013917 I 0.000
lhx8a Gasterosteus aculeatus ENSGACG00000014969 I 0.000
ENSGACG00000005381 Gasterosteus aculeatus ENSGACG00000005381 I 0.000
lhx6 Gasterosteus aculeatus ENSGACG00000017345 I 0.000
ENSGACG00000003944 Gasterosteus aculeatus ENSGACG00000003944 I 0.000
Gfo_R012327 Geospiza fortis Gfo_R012327 I 0.000
Gfo_R007924 Geospiza fortis Gfo_R007924 I 0.000
LHX8 Gorilla gorilla ENSGGOG00000026204 I 0.000
LHX8 Homo sapiens ENSG00000162624 D 0.000
LHX6 Homo sapiens ENSG00000106852 D 0.000
XP_002156835.1 Hydra magnipapillata XP_002156835.1 I 0.000
HDID_0000463201 Hymenolepis diminuta HDID_0000463201 I 0.000
HmN_000892700 Hymenolepis microstoma HmN_000892700 I 0.000
HNAJ_0001276601 Hymenolepis nana HNAJ_0001276601 I 0.000
ENSSTOG00000012618 Ictidomys tridecemlineatus ENSSTOG00000012618 I 0.000
ENSLACG00000012027 Latimeria chalumnae ENSLACG00000012027 I 0.000
ENSLACG00000004542 Latimeria chalumnae ENSLACG00000004542 I 0.000
ENSLACG00000009230 Latimeria chalumnae ENSLACG00000009230 I 0.000
ENSLOCG00000003447 Lepisosteus oculatus ENSLOCG00000003447 I 0.000
ENSLOCG00000002986 Lepisosteus oculatus ENSLOCG00000002986 I 0.000
LHX6 Loxodonta africana ENSLAFG00000012133 I 0.000
LHX8 Loxodonta africana ENSLAFG00000015040 I 0.000
ENSP00000294638 Macaca fascicularis ENSP00000294638 I 0.000
LHX8 Macaca mulatta ENSMMUG00000005287 I 0.000
LHX6 Macaca mulatta ENSMMUG00000011453 I 0.000
ENSMEUG00000004940 Macropus eugenii ENSMEUG00000004940 I 0.000
LHX8 Meleagris gallopavo ENSMGAG00000012149 I 0.000
MCOS_0000037201 Mesocestoides corti MCOS_0000037201 I 0.000
LHX8 Microcebus murinus ENSMICG00000012199 I 0.000
ML45004a Mnemiopsis leidyi ML45004a I 0.000
ML435823a Mnemiopsis leidyi ML435823a I 0.000
ML03046a Mnemiopsis leidyi ML03046a I 0.000
LHX6 Monodelphis domestica ENSMODG00000019686 I 0.000
SEBOX Monodelphis domestica ENSMODG00000019242 I 0.000
ENSMPUG00000010963 Mustela putorius furo ENSMPUG00000010963 I 0.000
ENSMPUG00000007253 Mustela putorius furo ENSMPUG00000007253 I 0.000
Lhx8 Mus musculus ENSMUSG00000096225 D 0.000
Lhx6 Mus musculus ENSMUSG00000026890 D 0.000
Myotis_brandtii_LHX8_10032427 Myotis brandtii Myotis_brandtii_LHX8_10032427 I 0.000
LHX8 Myotis lucifugus ENSMLUG00000001749 I 0.000
LHX6 Myotis lucifugus ENSMLUG00000004783 I 0.000
ENSNLEG00000009567 Nomascus leucogenys ENSNLEG00000009567 I 0.000
LHX6 Ochotona princeps ENSOPRG00000010365 I 0.000
Ogr03490 Ophisaurus gracilis Ogr03490 I 0.000
Ogr17312 Ophisaurus gracilis Ogr17312 I 0.000
Ogr12626 Ophisaurus gracilis Ogr12626 I 0.000
Ogr14147 Ophisaurus gracilis Ogr14147 I 0.000
ENSONIG00000003722 Oreochromis niloticus ENSONIG00000003722 I 0.000
ENSONIG00000002052 Oreochromis niloticus ENSONIG00000002052 I 0.000
ENSONIG00000010879 Oreochromis niloticus ENSONIG00000010879 I 0.000
ENSONIG00000011305 Oreochromis niloticus ENSONIG00000011305 I 0.000
ENSONIG00000010719 Oreochromis niloticus ENSONIG00000010719 I 0.000
ENSONIG00000016653 Oreochromis niloticus ENSONIG00000016653 I 0.000
LHX8 Ornithorhynchus anatinus ENSOANG00000013288 I 0.000
LHX6 Ornithorhynchus anatinus ENSOANG00000004698 I 0.000
LHX8 Oryctolagus cuniculus ENSOCUG00000003641 I 0.000
SEBOX Oryzias latipes ENSORLG00000009835 I 0.000
lhx6 Oryzias latipes ENSORLG00000009953 I 0.000
lhx8b Oryzias latipes ENSORLG00000003999 I 0.000
si:ch211-236k19.2 Oryzias latipes ENSORLG00000000498 I 0.000
ENSORLG00000000457 Oryzias latipes ENSORLG00000000457 I 0.000
lhx8a Oryzias latipes ENSORLG00000013156 I 0.000
LHX8 Otolemur garnettii ENSOGAG00000030114 I 0.000
LHX6 Otolemur garnettii ENSOGAG00000015097 I 0.000
ENSOARG00000012587 Ovis aries ENSOARG00000012587 I 0.000
LHX6 Pan troglodytes ENSPTRG00000021322 I 0.000
LHX8 Pan troglodytes ENSPTRG00000000868 I 0.000
ENSPANG00000020401 Papio anubis ENSPANG00000020401 I 0.000
Lhx6_CONSTRUCT PBM CONSTRUCTS Lhx6_CONSTRUCT D 0.000
ENSPSIG00000017976 Pelodiscus sinensis ENSPSIG00000017976 I 0.000
ENSPSIG00000008460 Pelodiscus sinensis ENSPSIG00000008460 I 0.000
ENSPMAG00000010446 Petromyzon marinus ENSPMAG00000010446 I 0.000
ENSPFOG00000018085 Poecilia formosa ENSPFOG00000018085 I 0.000
ENSPFOG00000011418 Poecilia formosa ENSPFOG00000011418 I 0.000
ENSPFOG00000002129 Poecilia formosa ENSPFOG00000002129 I 0.000
ENSPFOG00000004918 Poecilia formosa ENSPFOG00000004918 I 0.000
ENSPFOG00000005573 Poecilia formosa ENSPFOG00000005573 I 0.000
ENSPFOG00000019707 Poecilia formosa ENSPFOG00000019707 I 0.000
Pvit_08501 Pogona vitticeps Pvit_08501 I 0.000
Pvit_10384 Pogona vitticeps Pvit_10384 I 0.000
ENSPPYG00000001233 Pongo abelii ENSPPYG00000001233 I 0.000
ENSPPYG00000029369 Pongo abelii ENSPPYG00000029369 I 0.000
LHX8 Procavia capensis ENSPCAG00000007588 I 0.000
ISX Pteropus vampyrus ENSPVAG00000011410 I 0.000
LHX6 Pteropus vampyrus ENSPVAG00000000862 I 0.000
LHX8 Pteropus vampyrus ENSPVAG00000001705 I 0.000
Lhx8 Rattus norvegicus ENSRNOG00000028348 I 0.000
Lhx6 Rattus norvegicus ENSRNOG00000005996 I 0.000
Sakowv30037724m.g Saccoglossus kowalevskii Sakowv30037724m.g I 0.000
Sakowv30037725m.g Saccoglossus kowalevskii Sakowv30037725m.g I 0.000
Sakowv30037729m.g Saccoglossus kowalevskii Sakowv30037729m.g I 0.000
Sakowv30037714m.g Saccoglossus kowalevskii Sakowv30037714m.g I 0.000
ENSSHAG00000003271 Sarcophilus harrisii ENSSHAG00000003271 I 0.000
ENSSHAG00000011957 Sarcophilus harrisii ENSSHAG00000011957 I 0.000
ENSSHAG00000012656 Sarcophilus harrisii ENSSHAG00000012656 I 0.000
ENSSARG00000006321 Sorex araneus ENSSARG00000006321 I 0.000
SPER_0001757501 Spirometra erinaceieuropaei SPER_0001757501 I 0.000
SMAR003378 Strigamia maritima SMAR003378 I 0.000
LHX8 Sus scrofa ENSSSCG00000003778 I 0.000
SMUV_0000169601 Syphacia muris SMUV_0000169601 I 0.000
TsM_000072100 Taenia solium TsM_000072100 I 0.000
LHX6 Taeniopygia guttata ENSTGUG00000006782 I 0.000
LHX8 Taeniopygia guttata ENSTGUG00000010411 I 0.000
ENSTRUG00000000957 Takifugu rubripes ENSTRUG00000000957 I 0.000
ENSTRUG00000005926 Takifugu rubripes ENSTRUG00000005926 I 0.000
lhx8a Takifugu rubripes ENSTRUG00000007669 I 0.000
ENSTRUG00000009443 Takifugu rubripes ENSTRUG00000009443 I 0.000
ENSTRUG00000010925 Takifugu rubripes ENSTRUG00000010925 I 0.000
ENSTRUG00000012518 Takifugu rubripes ENSTRUG00000012518 I 0.000
ENSTRUG00000016703 Takifugu rubripes ENSTRUG00000016703 I 0.000
lhx8b Takifugu rubripes ENSTRUG00000017607 I 0.000
lhx6 Tetraodon nigroviridis ENSTNIG00000009140 I 0.000
lhx8b Tetraodon nigroviridis ENSTNIG00000010700 I 0.000
ENSTNIG00000014285 Tetraodon nigroviridis ENSTNIG00000014285 I 0.000
Q4RRY4_TETNG Tetraodon nigroviridis Q4RRY4_TETNG D 0.000
si:ch211-236k19.2 Tetraodon nigroviridis ENSTNIG00000015588 I 0.000
ENSTNIG00000017092 Tetraodon nigroviridis ENSTNIG00000017092 D 0.000
LHX8 Tupaia belangeri ENSTBEG00000002448 I 0.000
LHX6 Tursiops truncatus ENSTTRG00000007103 I 0.000
LHX8 Tursiops truncatus ENSTTRG00000015391 I 0.000
ENSVPAG00000008615 Vicugna pacos ENSVPAG00000008615 I 0.000
sebox Xenopus tropicalis XB-GENE-853158 I 0.000
lhx8 Xenopus tropicalis XB-GENE-494997 I 0.000
lhx6 Xenopus tropicalis XB-GENE-493341 I 0.000
ENSXMAG00000018461 Xiphophorus maculatus ENSXMAG00000018461 I 0.000
ENSXMAG00000013139 Xiphophorus maculatus ENSXMAG00000013139 I 0.000
ENSXMAG00000007518 Xiphophorus maculatus ENSXMAG00000007518 I 0.000
ENSXMAG00000003235 Xiphophorus maculatus ENSXMAG00000003235 I 0.000
ENSXMAG00000003545 Xiphophorus maculatus ENSXMAG00000003545 I 0.000