CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J12411
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.J12411
T298961_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J12411.1.p
NAC/NAM
11
144
FRGFRLNPTPLEAATYYLPQLLAGAPLHEAVRPFIHHADVYACEPGELARQFRPLPKTGHRFFFTHCKLQQPHCRAGNKASKAKATRAAGAGSWHSQGVTDVVDGNEVKVGEMRKLRYKKGGAYTDWLMDEYST
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Cb02140
Panicum virgatum
Pavir.Cb02140
N
0.997
Pavir.Ha01903
Panicum virgatum
Pavir.Ha01903
N
0.997
Pavir.J04858
Panicum virgatum
Pavir.J04858
N
0.996
Si027418m.g
Setaria italica
Si027418m.g
N
0.996
Si033305m.g
Setaria italica
Si033305m.g
N
0.996
Si028319m.g
Setaria italica
Si028319m.g
N
0.996
Si027763m.g
Setaria italica
Si027763m.g
N
0.996
Si027582m.g
Setaria italica
Si027582m.g
N
0.992
Pavir.J16079
Panicum virgatum
Pavir.J16079
N
0.990