Pavir.J23199 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.J23199 T298986_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC100
M02375_2.00
Arabidopsis thaliana
NBAMKNHWNN

NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH7239
0.917 0.816
ANAC100
M02377_2.00
Arabidopsis lyrata
DYACGYHANN

NNTDRCGTRH
PBM
Weirauch et al.(2014)
pTH9234
0.907 0.807
NAC92
M00979_2.00
Arabidopsis thaliana
NNDYACGBHA

TDVCGTRHNN
PBM
Lindemose et al.(2014)
ANAC092
0.900 0.798
NAC92
M00730_2.00
Arabidopsis thaliana
DYACGNHAN

NTDNCGTRH
PBM
Chang et al.(2013)
pTH7335
0.900 0.798
NAC92
M07234_2.00
Arabidopsis thaliana
TWNCKTGHNNHDCAMGYWAY

RTWRCKTGHDNNDCAMGNWA
Dap-seq
OMalley et al.(2016)
ANAC092_colamp_a
0.900 0.798
NAC92
M07235_2.00
Arabidopsis thaliana
WRCKTGTNNNDCAMG

CKTGHNNNACAMGYW
Dap-seq
OMalley et al.(2016)
ANAC092_col_v3a
0.900 0.798
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA

TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.900 0.789
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG

CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.900 0.789
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW

WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.899 0.728
ANAC080
M02376_2.00
Arabidopsis lyrata
NBAMKNHWNN

NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH9230
0.899 0.798
NAC079
M02373_2.00
Arabidopsis thaliana
TTGCGTRY

RYACGCAA
PBM
Weirauch et al.(2014)
pTH7399
0.898 0.781
NAC079
M07228_2.00
Arabidopsis thaliana
CBWNHNNHACACGYWA

TWRCGTGTDNNDNWVG
Dap-seq
OMalley et al.(2016)
ANAC079_colamp_a
0.898 0.781
NAC079
M07229_2.00
Arabidopsis thaliana
NTWNCKTVHNNHWCAMGYWAH

DTWRCKTGWDNNDBAMGNWAN
Dap-seq
OMalley et al.(2016)
ANAC079_col
0.898 0.781
NAC59
M11080_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANAC059_01
0.894 0.772
e_gw1.327.11.1
M02382_2.00
Physcomitrella patens
NTTDYRTWWN

NWWAYRHAAN
PBM
Weirauch et al.(2014)
pTH8478
0.886 0.711
e_gw1.159.34.1
M02379_2.00
Physcomitrella patens
DYACGNHANN

NNTDNCGTRH
PBM
Weirauch et al.(2014)
pTH8477
0.877 0.737
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J23199.1.p NAC/NAM 18 142

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NAC100 Arabidopsis thaliana AT5G61430 D 0.917
ANAC100 Arabidopsis lyrata fgenesh2_kg.8__2118__AT5G61430.1 D 0.907
e_gw1.288.15.1 Physcomitrella patens e_gw1.288.15.1 D 0.899
NAC098 Arabidopsis thaliana AT5G53950 D 0.900
NAC92 Arabidopsis thaliana AT5G39610 D 0.900
NAC079 Arabidopsis thaliana AT5G07680 D 0.898
NAC59 Arabidopsis thaliana AT3G29035 D 0.894
ANAC080 Arabidopsis lyrata fgenesh2_kg.6__736__AT5G07680.1 D 0.899
e_gw1.327.11.1 Physcomitrella patens e_gw1.327.11.1 D 0.886
e_gw1.159.34.1 Physcomitrella patens e_gw1.159.34.1 D 0.877
e_gw1.227.43.1 Physcomitrella patens e_gw1.227.43.1 I 0.881
Cucsa.197830 Cucumis sativus Cucsa.197830 I 0.891
Cucsa.122890 Cucumis sativus Cucsa.122890 I 0.887
Cucsa.112890 Cucumis sativus Cucsa.112890 I 0.876
Cla019391 Citrullus lanatus Cla019391 I 0.891
cassava44869.m1 Manihot esculenta cassava44869.m1 I 0.901
cassava361.valid.m1 Manihot esculenta cassava361.valid.m1 I 0.889
estExt_gwp_gw1.C_460173 Physcomitrella patens estExt_gwp_gw1.C_460173 I 0.889
mgf003818m Mimulus guttatus mgf003818m I 0.874
Carubv10001372m.g Capsella rubella Carubv10001372m.g I 0.898
Cagra.6981s0001 Capsella grandiflora Cagra.6981s0001 I 0.897
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I 0.900
Cagra.2925s0018 Capsella grandiflora Cagra.2925s0018 I 0.898
Cagra.0542s0037 Capsella grandiflora Cagra.0542s0037 I 0.907
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I 0.900
Bostr.26833s0095 Boechera stricta Bostr.26833s0095 I 0.916
Bostr.13129s0198 Boechera stricta Bostr.13129s0198 I 0.899
Bostr.10058s0039 Boechera stricta Bostr.10058s0039 I 0.900
Aquca_033_00035 Aquilegia coerulea Aquca_033_00035 I 0.879
Aquca_002_00662 Aquilegia coerulea Aquca_002_00662 I 0.893
mgf023988m Mimulus guttatus mgf023988m I 0.882
cassava21580.m1 Manihot esculenta cassava21580.m1 I 0.871
cassava1758.valid.m1 Manihot esculenta cassava1758.valid.m1 I 0.889
VIT_19s0014g02200 Vitis vinifera VIT_19s0014g02200 I 0.879
CUC3 Vitis vinifera VIT_18s0122g00800 I 0.871
VIT_17s0000g06400 Vitis vinifera VIT_17s0000g06400 I 0.881
VIT_14s0108g01070 Vitis vinifera VIT_14s0108g01070 I 0.884
TCM_034835 Theobroma cacao TCM_034835 I 0.871
TCM_031619 Theobroma cacao TCM_031619 I 0.901
TCM_018621 Theobroma cacao TCM_018621 I 0.887
TCM_014073 Theobroma cacao TCM_014073 I 0.899
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I 0.903
Si030187m.g Setaria italica Si030187m.g I 0.889
Solyc06g069710.2 Solanum lycopersicum Solyc06g069710.2 I 0.876
Ca_11021 Cicer arietinum Ca_11021 I 0.876
Ca_22370 Cicer arietinum Ca_22370 I 0.891
cassava1757.valid.m1 Manihot esculenta cassava1757.valid.m1 I 0.886
30170.m014236 Ricinus communis 30170.m014236 I 0.871
28649.m000212 Ricinus communis 28649.m000212 I 0.891
27950.m000105 Ricinus communis 27950.m000105 I 0.901
Pm024887 Prunus mume Pm024887 I 0.895
Pm015914 Prunus mume Pm015914 I 0.878
Pm011397 Prunus mume Pm011397 I 0.901
Cla023717 Citrullus lanatus Cla023717 I 0.887
Cla017258 Citrullus lanatus Cla017258 I 0.893
Cla010484 Citrullus lanatus Cla010484 I 0.932
Ca_22532 Cicer arietinum Ca_22532 I 0.883
Solyc02g088180.2 Solanum lycopersicum Solyc02g088180.2 I 0.875
PDK_20s1323531g003 Phoenix dactylifera PDK_20s1323531g003 I 0.874
SapurV1A.0266s0070 Salix purpurea SapurV1A.0266s0070 I 0.871
SapurV1A.0207s0120 Salix purpurea SapurV1A.0207s0120 I 0.871
Pavir.J02772 Panicum virgatum Pavir.J02772 I 0.889
Pavir.J00978 Panicum virgatum Pavir.J00978 I 0.876
Pavir.Gb01850 Panicum virgatum Pavir.Gb01850 I 0.944
orange1.1g047710m.g Citrus sinensis orange1.1g047710m.g I 0.899
orange1.1g018950m.g Citrus sinensis orange1.1g018950m.g I 0.902
orange1.1g016283m.g Citrus sinensis orange1.1g016283m.g I 0.872
MDP0000911724 Malus domestica MDP0000911724 I 0.897
MDP0000310981 Malus domestica MDP0000310981 I 0.901
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I 0.901
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I 0.901
Thhalv10004550m.g Eutrema salsugineum Thhalv10004550m.g I 0.911
LjSGA_071377.1 Lotus japonicus LjSGA_071377.1 I 0.875
chr4.CM0087.800.nd Lotus japonicus chr4.CM0087.800.nd I 0.897
chr3.CM0282.730.nc Lotus japonicus chr3.CM0282.730.nc I 0.874
chr1.CM0141.310.nc Lotus japonicus chr1.CM0141.310.nc I 0.876
PK26741.1 Cannabis sativa PK26741.1 I 0.872
PK13860.1 Cannabis sativa PK13860.1 I 0.907
Thhalv10027874m.g Eutrema salsugineum Thhalv10027874m.g I 0.902
Thhalv10014081m.g Eutrema salsugineum Thhalv10014081m.g I 0.898
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I 0.900
Thhalv10004583m.g Eutrema salsugineum Thhalv10004583m.g I 0.895
MDP0000276765 Malus domestica MDP0000276765 I 0.878
MDP0000232050 Malus domestica MDP0000232050 I 0.897
MDP0000135860 Malus domestica MDP0000135860 I 0.892
evm.TU.supercontig_286.12 Carica papaya evm.TU.supercontig_286.12 I 0.878
evm.TU.supercontig_131.88 Carica papaya evm.TU.supercontig_131.88 I 0.901
evm.TU.supercontig_111.22 Carica papaya evm.TU.supercontig_111.22 I 0.894
Eucgr.B00529 Eucalyptus grandis Eucgr.B00529 I 0.915
Ciclev10012093m.g Citrus clementina Ciclev10012093m.g I 0.902
Ciclev10008619m.g Citrus clementina Ciclev10008619m.g I 0.899
Ciclev10001403m.g Citrus clementina Ciclev10001403m.g I 0.872
Carubv10028330m.g Capsella rubella Carubv10028330m.g I 0.900
Carubv10026752m.g Capsella rubella Carubv10026752m.g I 0.907
Carubv10017737m.g Capsella rubella Carubv10017737m.g I 0.903
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I 0.880
gene00971-v1.0-hybrid Fragaria vesca gene00971-v1.0-hybrid I 0.878
gene04424-v1.0-hybrid Fragaria vesca gene04424-v1.0-hybrid I 0.891
MDP0000129335 Malus domestica MDP0000129335 I 0.897
Lus10041924.g Linum usitatissimum Lus10041924.g I 0.901
Lus10005537.g Linum usitatissimum Lus10005537.g I 0.901
Gorai.013G171300 Gossypium raimondii Gorai.013G171300 I 0.897
Gorai.008G194400 Gossypium raimondii Gorai.008G194400 I 0.900
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I 0.908
Gorai.007G079900 Gossypium raimondii Gorai.007G079900 I 0.905
Gorai.007G038100 Gossypium raimondii Gorai.007G038100 I 0.894
Gorai.002G067300 Gossypium raimondii Gorai.002G067300 I 0.901
gene26043-v1.0-hybrid Fragaria vesca gene26043-v1.0-hybrid I 0.871
Carubv10005201m.g Capsella rubella Carubv10005201m.g I 0.897
MTR_2g078700 Medicago truncatula MTR_2g078700 I 0.893
GLYMA12G35530 Glycine max GLYMA12G35530 I 0.885
GLYMA12G26190 Glycine max GLYMA12G26190 I 0.874
GLYMA09G37050 Glycine max GLYMA09G37050 I 0.908
GLYMA06G35660 Glycine max GLYMA06G35660 I 0.874
GLYMA06G21020 Glycine max GLYMA06G21020 I 0.916
GLYMA05G00930 Glycine max GLYMA05G00930 I 0.921
GLYMA04G33270 Glycine max GLYMA04G33270 I 0.909
ATNAC2 Arabidopsis lyrata fgenesh2_kg.7__3461__AT5G39610.1 I 0.900
ATNAC3 Arabidopsis lyrata fgenesh2_kg.5__665__AT3G29035.1 I 0.902
BRADI5G12407 Brachypodium distachyon BRADI5G12407 I 0.936
GLYMA13G05540 Glycine max GLYMA13G05540 I 0.897
GLYMA13G34950 Glycine max GLYMA13G34950 I 0.885
GLYMA17G10970 Glycine max GLYMA17G10970 I 0.913
LPERR09G11330 Leersia perrieri LPERR09G11330 I 0.890
LPERR06G12840 Leersia perrieri LPERR06G12840 I 0.894
LPERR04G11740 Leersia perrieri LPERR04G11740 I 0.927
GSMUA_Achr10G22350_001 Musa acuminata GSMUA_Achr10G22350_001 I 0.884
GRMZM2G393433 Zea mays GRMZM2G393433 I 0.876
GRMZM2G386163 Zea mays GRMZM2G386163 I 0.893
GRMZM2G009892 Zea mays GRMZM2G009892 I 0.916
GRMZM2G008374 Zea mays GRMZM2G008374 I 0.881
GLYMA19G02850 Glycine max GLYMA19G02850 I 0.878
GLYMA18G49620 Glycine max GLYMA18G49620 I 0.914
Bra036223 Brassica rapa Bra036223 I 0.895
Bra029313 Brassica rapa Bra029313 I 0.907
Bra028685 Brassica rapa Bra028685 I 0.891
Bo2g161570 Brassica oleracea Bo2g161570 I 0.903
Bo2g043280 Brassica oleracea Bo2g043280 I 0.903
Bo2g008760 Brassica oleracea Bo2g008760 I 0.879
Bo00578s090 Brassica oleracea Bo00578s090 I 0.905
BGIOSGA029508 Oryza indica BGIOSGA029508 I 0.890
BGIOSGA022861 Oryza indica BGIOSGA022861 I 0.894
BGIOSGA016546 Oryza indica BGIOSGA016546 I 0.933
BGIOSGA008492 Oryza indica BGIOSGA008492 I 0.875
AMTR_s00058p00136280 Amborella trichopoda AMTR_s00058p00136280 I 0.892
AMTR_s00010p00266320 Amborella trichopoda AMTR_s00010p00266320 I 0.907
Bo6g062160 Brassica oleracea Bo6g062160 I 0.906
Bo7g087220 Brassica oleracea Bo7g087220 I 0.885
Bo7g098620 Brassica oleracea Bo7g098620 I 0.907
Bra028435 Brassica rapa Bra028435 I 0.902
Bra025658 Brassica rapa Bra025658 I 0.905
Bra025374 Brassica rapa Bra025374 I 0.898
Bra022685 Brassica rapa Bra022685 I 0.903
Bra012960 Brassica rapa Bra012960 I 0.907
Bra009246 Brassica rapa Bra009246 I 0.879
Bra002148 Brassica rapa Bra002148 I 0.873
Bo9g157320 Brassica oleracea Bo9g157320 I 0.873
Bo9g113820 Brassica oleracea Bo9g113820 I 0.900
Bo9g008770 Brassica oleracea Bo9g008770 I 0.889
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I 0.900
Si010553m.g Setaria italica Si010553m.g I 0.935
OS06G0344900 Oryza sativa OS06G0344900 I 0.894
OS04G0460600 Oryza sativa OS04G0460600 I 0.933
OS02G0579000 Oryza sativa OS02G0579000 I 0.875
ORUFI09G16430 Oryza rufipogon ORUFI09G16430 I 0.890
ORUFI06G14810 Oryza rufipogon ORUFI06G14810 I 0.894
ORUFI04G16370 Oryza rufipogon ORUFI04G16370 I 0.933
ORUFI02G22930 Oryza rufipogon ORUFI02G22930 I 0.875
ORGLA09G0117400 Oryza glaberrima ORGLA09G0117400 I 0.890
ORGLA06G0124600 Oryza glaberrima ORGLA06G0124600 I 0.894
ORGLA04G0119700 Oryza glaberrima ORGLA04G0119700 I 0.933
OS09G0497900 Oryza sativa OS09G0497900 I 0.890
PGSC0003DMG400001338 Solanum tuberosum PGSC0003DMG400001338 I 0.875
PGSC0003DMG400033047 Solanum tuberosum PGSC0003DMG400033047 I 0.875
Si007886m.g Setaria italica Si007886m.g I 0.876
Sb08g006330 Sorghum bicolor Sb08g006330 I 0.877
Sb06g019010 Sorghum bicolor Sb06g019010 I 0.933
Sb02g028870 Sorghum bicolor Sb02g028870 I 0.889
PRUPE_ppa026810mg Prunus persica PRUPE_ppa026810mg I 0.901
PRUPE_ppa007883mg Prunus persica PRUPE_ppa007883mg I 0.879
PRUPE_ppa007653mg Prunus persica PRUPE_ppa007653mg I 0.902
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I 0.901
POPTR_0005s27720 Populus trichocarpa POPTR_0005s27720 I 0.871
POPTR_0001s40680 Populus trichocarpa POPTR_0001s40680 I 0.871
OPUNC09G13640 Oryza punctata OPUNC09G13640 I 0.890
OPUNC06G13130 Oryza punctata OPUNC06G13130 I 0.894
OPUNC04G12870 Oryza punctata OPUNC04G12870 I 0.955
OGLUM04G14830 Oryza glumaepatula OGLUM04G14830 I 0.933
OGLUM02G22030 Oryza glumaepatula OGLUM02G22030 I 0.875
OBART09G15220 Oryza barthii OBART09G15220 I 0.890
OBART06G13940 Oryza barthii OBART06G13940 I 0.894
OBART04G14970 Oryza barthii OBART04G14970 I 0.933
OBART02G21850 Oryza barthii OBART02G21850 I 0.875
OB06G22100 Oryza brachyantha OB06G22100 I 0.894
OB04G22290 Oryza brachyantha OB04G22290 I 0.951
MTR_4g108760 Medicago truncatula MTR_4g108760 I 0.878
MTR_3g435150 Medicago truncatula MTR_3g435150 I 0.898
OGLUM06G14810 Oryza glumaepatula OGLUM06G14810 I 0.894
OGLUM09G15820 Oryza glumaepatula OGLUM09G15820 I 0.890
OPUNC02G19580 Oryza punctata OPUNC02G19580 I 0.898
ONIVA09G15800 Oryza nivara ONIVA09G15800 I 0.890
ONIVA04G13100 Oryza nivara ONIVA04G13100 I 0.933
ONIVA03G33370 Oryza nivara ONIVA03G33370 I 0.894
ONIVA02G24080 Oryza nivara ONIVA02G24080 I 0.875
OMERI07G04410 Oryza meridionalis OMERI07G04410 I 0.890
OMERI02G21390 Oryza meridionalis OMERI02G21390 I 0.875
OLONG_019251 Oryza longistaminata OLONG_019251 I 0.894
OLONG_009674 Oryza longistaminata OLONG_009674 I 0.890
OLONG_008218 Oryza longistaminata OLONG_008218 I 0.928
MTR_3g070030 Medicago truncatula MTR_3g070030 I 0.881
OB02G29280 Oryza brachyantha OB02G29280 N 0.873