CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10008226m.g
(
Eutrema salsugineum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Thhalv10008226m.g
T299225_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BRN2
M07217_2.00
Arabidopsis thaliana
CKTVHDNNNYAMGYWA
TWRCKTRNNNHDBAMG
Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a
0.973
0.939
BRN2
M07218_2.00
Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH
DDTWRCKTRHDNHDBAMGHWA
Dap-seq
OMalley et al.(2016)
ANAC070_col
0.973
0.939
SMB
M07184_2.00
Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH
DRTWRCKTRNDNHDBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_col_a
0.918
0.781
SMB
M07185_2.00
Arabidopsis thaliana
TWNCKTVNNNNNYAMG
CKTRNNNNNBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_colamp_a
0.918
0.781
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN
NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.909
0.781
NAC012
M00971_2.00
Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN
PBM
Lindemose et al.(2014)
SND1
0.888
0.781
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10008226m
NAC/NAM
9
136
PPGFRFHPTDEELLHYYLKKKISYEKFEMEVIREVDLNKIEPWDLQDRCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRSCYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRI
Links
Other
NAC/NAM
family TFs
Other
Eutrema salsugineum
TFs
213 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy