CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Thhalv10028684m.g
(
Eutrema salsugineum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Thhalv10028684m.g
T299312_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.988
0.783
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.933
0.704
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.933
0.704
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10028684m
NAC/NAM
5
133
LVGYRFCPTGEELINHYLKNKILGKSWLVDDAISEINICSYEPICLPSLSKIESEDPVWYFFSPKEYTSAKKNATKRTTRFGFWKSTGKDRKIKDKRGEIIGNKKTLVYHEGRSPNGVGTRWVIHEYEI
Links
Other
NAC/NAM
family TFs
Other
Eutrema salsugineum
TFs
121 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy