CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chr1.CM0141.310.nc
(
Lotus japonicus
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
chr1.CM0141.310.nc
T299380_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.923
0.781
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.923
0.781
NAC100
M02375_2.00
Arabidopsis thaliana
NBAMKNHWNN
NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH7239
0.899
0.754
NAC59
M11080_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANAC059_01
0.894
0.772
ANAC100
M02377_2.00
Arabidopsis lyrata
DYACGYHANN
NNTDRCGTRH
PBM
Weirauch et al.(2014)
pTH9234
0.894
0.754
NAC92
M00979_2.00
Arabidopsis thaliana
NNDYACGBHA
TDVCGTRHNN
PBM
Lindemose et al.(2014)
ANAC092
0.887
0.754
NAC92
M00730_2.00
Arabidopsis thaliana
DYACGNHAN
NTDNCGTRH
PBM
Chang et al.(2013)
pTH7335
0.887
0.754
NAC92
M07234_2.00
Arabidopsis thaliana
TWNCKTGHNNHDCAMGYWAY
RTWRCKTGHDNNDCAMGNWA
Dap-seq
OMalley et al.(2016)
ANAC092_colamp_a
0.887
0.754
NAC92
M07235_2.00
Arabidopsis thaliana
WRCKTGTNNNDCAMG
CKTGHNNNACAMGYW
Dap-seq
OMalley et al.(2016)
ANAC092_col_v3a
0.887
0.754
ANAC080
M02376_2.00
Arabidopsis lyrata
NBAMKNHWNN
NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH9230
0.886
0.754
NAC079
M02373_2.00
Arabidopsis thaliana
TTGCGTRY
RYACGCAA
PBM
Weirauch et al.(2014)
pTH7399
0.885
0.754
NAC079
M07228_2.00
Arabidopsis thaliana
CBWNHNNHACACGYWA
TWRCGTGTDNNDNWVG
Dap-seq
OMalley et al.(2016)
ANAC079_colamp_a
0.885
0.754
NAC079
M07229_2.00
Arabidopsis thaliana
NTWNCKTVHNNHWCAMGYWAH
DTWRCKTGWDNNDBAMGNWAN
Dap-seq
OMalley et al.(2016)
ANAC079_col
0.885
0.754
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW
WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.880
0.763
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr1.CM0141.310.nc
NAC/NAM
17
142
PPGFRFHPTDEELISHYLTKKVVDSCFIAMAIAEVDFNKCEPWDLPGLAKTGETEWYYFCLRHRKNPTGLRTNRATDAGYWKATGKDKEIITMENALIGMRKTLVFYKGRAPNGEKTNWVLHEYRL
Links
Other
NAC/NAM
family TFs
Other
Lotus japonicus
TFs
207 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NAC098
Arabidopsis thaliana
AT5G53950
D
0.923
ANAC100
Arabidopsis lyrata
fgenesh2_kg.8__2118__AT5G61430.1
D
0.894
NAC100
Arabidopsis thaliana
AT5G61430
D
0.899
NAC92
Arabidopsis thaliana
AT5G39610
D
0.887
NAC079
Arabidopsis thaliana
AT5G07680
D
0.885
NAC59
Arabidopsis thaliana
AT3G29035
D
0.894
ANAC080
Arabidopsis lyrata
fgenesh2_kg.6__736__AT5G07680.1
D
0.886
e_gw1.288.15.1
Physcomitrella patens
e_gw1.288.15.1
D
0.880
Aquca_033_00035
Aquilegia coerulea
Aquca_033_00035
I
0.901
Aquca_015_00272
Aquilegia coerulea
Aquca_015_00272
I
0.877
Aquca_007_00948
Aquilegia coerulea
Aquca_007_00948
I
0.887
Aquca_002_00662
Aquilegia coerulea
Aquca_002_00662
I
0.911
mgf023988m
Mimulus guttatus
mgf023988m
I
0.888
mgf023466m
Mimulus guttatus
mgf023466m
I
0.888
mgf003818m
Mimulus guttatus
mgf003818m
I
0.903
mgf018675m
Mimulus guttatus
mgf018675m
I
0.876
Bostr.10058s0039
Boechera stricta
Bostr.10058s0039
I
0.887
Bostr.13129s0198
Boechera stricta
Bostr.13129s0198
I
0.887
Bostr.26833s0095
Boechera stricta
Bostr.26833s0095
I
0.903
Ciclev10008619m.g
Citrus clementina
Ciclev10008619m.g
I
0.914
Ciclev10001403m.g
Citrus clementina
Ciclev10001403m.g
I
0.898
Carubv10028330m.g
Capsella rubella
Carubv10028330m.g
I
0.923
Carubv10026752m.g
Capsella rubella
Carubv10026752m.g
I
0.894
Carubv10005201m.g
Capsella rubella
Carubv10005201m.g
I
0.886
Carubv10001372m.g
Capsella rubella
Carubv10001372m.g
I
0.885
Cagra.6981s0001
Capsella grandiflora
Cagra.6981s0001
I
0.879
Cagra.4622s0005
Capsella grandiflora
Cagra.4622s0005
I
0.923
Cagra.2925s0018
Capsella grandiflora
Cagra.2925s0018
I
0.885
Cagra.0542s0037
Capsella grandiflora
Cagra.0542s0037
I
0.894
Bostr.26833s0880
Boechera stricta
Bostr.26833s0880
I
0.923
Cucsa.338700
Cucumis sativus
Cucsa.338700
I
0.903
Cucsa.272370
Cucumis sativus
Cucsa.272370
I
0.887
Pm022916
Prunus mume
Pm022916
I
0.877
Pm015914
Prunus mume
Pm015914
I
0.900
Pm011397
Prunus mume
Pm011397
I
0.921
Cla023834
Citrullus lanatus
Cla023834
I
0.887
Cla023717
Citrullus lanatus
Cla023717
I
0.895
Cla017258
Citrullus lanatus
Cla017258
I
0.899
Ca_22532
Cicer arietinum
Ca_22532
I
0.901
Ca_22370
Cicer arietinum
Ca_22370
I
0.917
VIT_17s0000g06400
Vitis vinifera
VIT_17s0000g06400
I
0.876
Ca_11021
Cicer arietinum
Ca_11021
I
0.874
VIT_19s0014g02200
Vitis vinifera
VIT_19s0014g02200
I
0.901
Pm024887
Prunus mume
Pm024887
I
0.888
27950.m000105
Ricinus communis
27950.m000105
I
0.920
Cucsa.122890
Cucumis sativus
Cucsa.122890
I
0.895
Cucsa.112890
Cucumis sativus
Cucsa.112890
I
0.871
cassava44869.m1
Manihot esculenta
cassava44869.m1
I
0.921
cassava41252.m1
Manihot esculenta
cassava41252.m1
I
0.886
cassava361.valid.m1
Manihot esculenta
cassava361.valid.m1
I
0.905
cassava21580.m1
Manihot esculenta
cassava21580.m1
I
0.898
cassava21054.m1
Manihot esculenta
cassava21054.m1
I
0.889
cassava1758.valid.m1
Manihot esculenta
cassava1758.valid.m1
I
0.899
cassava1757.valid.m1
Manihot esculenta
cassava1757.valid.m1
I
0.901
30170.m014236
Ricinus communis
30170.m014236
I
0.895
28649.m000212
Ricinus communis
28649.m000212
I
0.905
CUC3
Vitis vinifera
VIT_18s0122g00800
I
0.898
PDK_20s1323531g003
Phoenix dactylifera
PDK_20s1323531g003
I
0.889
SapurV1A.0266s0070
Salix purpurea
SapurV1A.0266s0070
I
0.898
SapurV1A.0207s0120
Salix purpurea
SapurV1A.0207s0120
I
0.903
SapurV1A.0016s0340
Salix purpurea
SapurV1A.0016s0340
I
0.892
Pavir.J23199
Panicum virgatum
Pavir.J23199
I
0.876
Pavir.J02772
Panicum virgatum
Pavir.J02772
I
0.905
Pavir.J00978
Panicum virgatum
Pavir.J00978
I
0.892
orange1.1g047710m.g
Citrus sinensis
orange1.1g047710m.g
I
0.914
orange1.1g018950m.g
Citrus sinensis
orange1.1g018950m.g
I
0.910
orange1.1g016283m.g
Citrus sinensis
orange1.1g016283m.g
I
0.898
MDP0000911724
Malus domestica
MDP0000911724
I
0.881
SapurV1A.1325s0010
Salix purpurea
SapurV1A.1325s0010
I
0.929
SapurV1A.2059s0010
Salix purpurea
SapurV1A.2059s0010
I
0.929
Thhalv10004550m.g
Eutrema salsugineum
Thhalv10004550m.g
I
0.896
LjSGA_071377.1
Lotus japonicus
LjSGA_071377.1
I
0.898
chr4.CM0087.800.nd
Lotus japonicus
chr4.CM0087.800.nd
I
0.904
chr3.CM0282.730.nc
Lotus japonicus
chr3.CM0282.730.nc
I
0.907
PK26741.1
Cannabis sativa
PK26741.1
I
0.884
PK13860.1
Cannabis sativa
PK13860.1
I
0.895
Thhalv10027874m.g
Eutrema salsugineum
Thhalv10027874m.g
I
0.880
Thhalv10019493m.g
Eutrema salsugineum
Thhalv10019493m.g
I
0.886
Thhalv10014081m.g
Eutrema salsugineum
Thhalv10014081m.g
I
0.885
Thhalv10013863m.g
Eutrema salsugineum
Thhalv10013863m.g
I
0.923
Thhalv10004583m.g
Eutrema salsugineum
Thhalv10004583m.g
I
0.884
MDP0000310981
Malus domestica
MDP0000310981
I
0.921
MDP0000276765
Malus domestica
MDP0000276765
I
0.892
gene31474-v1.0-hybrid
Fragaria vesca
gene31474-v1.0-hybrid
I
0.887
gene04424-v1.0-hybrid
Fragaria vesca
gene04424-v1.0-hybrid
I
0.906
gene00971-v1.0-hybrid
Fragaria vesca
gene00971-v1.0-hybrid
I
0.900
evm.TU.supercontig_286.12
Carica papaya
evm.TU.supercontig_286.12
I
0.898
evm.TU.supercontig_14.101
Carica papaya
evm.TU.supercontig_14.101
I
0.882
evm.TU.supercontig_131.88
Carica papaya
evm.TU.supercontig_131.88
I
0.920
evm.TU.supercontig_111.22
Carica papaya
evm.TU.supercontig_111.22
I
0.890
Eucgr.I01958
Eucalyptus grandis
Eucgr.I01958
I
0.894
Eucgr.F03588
Eucalyptus grandis
Eucgr.F03588
I
0.887
Eucgr.B00529
Eucalyptus grandis
Eucgr.B00529
I
0.897
Gorai.002G067300
Gossypium raimondii
Gorai.002G067300
I
0.920
Gorai.002G113300
Gossypium raimondii
Gorai.002G113300
I
0.871
Gorai.007G038100
Gossypium raimondii
Gorai.007G038100
I
0.882
MDP0000135860
Malus domestica
MDP0000135860
I
0.915
Lus10041924.g
Linum usitatissimum
Lus10041924.g
I
0.919
Lus10030723.g
Linum usitatissimum
Lus10030723.g
I
0.880
Lus10013205.g
Linum usitatissimum
Lus10013205.g
I
0.874
Lus10005537.g
Linum usitatissimum
Lus10005537.g
I
0.919
Gorai.013G171300
Gossypium raimondii
Gorai.013G171300
I
0.913
Gorai.009G186000
Gossypium raimondii
Gorai.009G186000
I
0.891
Gorai.008G194400
Gossypium raimondii
Gorai.008G194400
I
0.893
Gorai.007G323900
Gossypium raimondii
Gorai.007G323900
I
0.920
Gorai.007G079900
Gossypium raimondii
Gorai.007G079900
I
0.919
Ciclev10012093m.g
Citrus clementina
Ciclev10012093m.g
I
0.910
GSMUA_Achr9G20090_001
Musa acuminata
GSMUA_Achr9G20090_001
I
0.876
GLYMA12G26190
Glycine max
GLYMA12G26190
I
0.896
GLYMA09G37050
Glycine max
GLYMA09G37050
I
0.940
GLYMA06G35660
Glycine max
GLYMA06G35660
I
0.896
GLYMA06G21020
Glycine max
GLYMA06G21020
I
0.894
GLYMA05G00930
Glycine max
GLYMA05G00930
I
0.898
GLYMA04G33270
Glycine max
GLYMA04G33270
I
0.887
ATNAC2
Arabidopsis lyrata
fgenesh2_kg.7__3461__AT5G39610.1
I
0.887
ATNAC3
Arabidopsis lyrata
fgenesh2_kg.5__665__AT3G29035.1
I
0.888
F775_52293
Aegilops tauschii
F775_52293
I
0.879
Bra036223
Brassica rapa
Bra036223
I
0.883
GLYMA12G35530
Glycine max
GLYMA12G35530
I
0.890
GLYMA13G05540
Glycine max
GLYMA13G05540
I
0.915
GLYMA13G34950
Glycine max
GLYMA13G34950
I
0.890
GSMUA_Achr8G24680_001
Musa acuminata
GSMUA_Achr8G24680_001
I
0.890
GSMUA_Achr7G19680_001
Musa acuminata
GSMUA_Achr7G19680_001
I
0.871
GSMUA_Achr10G26180_001
Musa acuminata
GSMUA_Achr10G26180_001
I
0.876
GSMUA_Achr10G22350_001
Musa acuminata
GSMUA_Achr10G22350_001
I
0.914
GRMZM2G393433
Zea mays
GRMZM2G393433
I
0.892
GRMZM2G386163
Zea mays
GRMZM2G386163
I
0.906
GRMZM2G008374
Zea mays
GRMZM2G008374
I
0.872
GLYMA19G02850
Glycine max
GLYMA19G02850
I
0.895
GLYMA18G49620
Glycine max
GLYMA18G49620
I
0.936
GLYMA17G10970
Glycine max
GLYMA17G10970
I
0.895
Bra029313
Brassica rapa
Bra029313
I
0.894
Bra028685
Brassica rapa
Bra028685
I
0.874
Bo6g062160
Brassica oleracea
Bo6g062160
I
0.883
Bo2g161570
Brassica oleracea
Bo2g161570
I
0.890
Bo2g089890
Brassica oleracea
Bo2g089890
I
0.883
Bo2g043280
Brassica oleracea
Bo2g043280
I
0.911
Bo00578s090
Brassica oleracea
Bo00578s090
I
0.888
BGIOSGA029508
Oryza indica
BGIOSGA029508
I
0.905
BGIOSGA022861
Oryza indica
BGIOSGA022861
I
0.908
AMTR_s00058p00136280
Amborella trichopoda
AMTR_s00058p00136280
I
0.914
AMTR_s00022p00160350
Amborella trichopoda
AMTR_s00022p00160350
I
0.886
AMTR_s00010p00266320
Amborella trichopoda
AMTR_s00010p00266320
I
0.916
Bo6g120460
Brassica oleracea
Bo6g120460
I
0.885
Bo7g098620
Brassica oleracea
Bo7g098620
I
0.894
Bo9g008770
Brassica oleracea
Bo9g008770
I
0.876
Bra028435
Brassica rapa
Bra028435
I
0.880
Bra025658
Brassica rapa
Bra025658
I
0.888
Bra025374
Brassica rapa
Bra025374
I
0.882
Bra022685
Brassica rapa
Bra022685
I
0.911
Bra015750
Brassica rapa
Bra015750
I
0.885
Bra012960
Brassica rapa
Bra012960
I
0.894
Bra009246
Brassica rapa
Bra009246
I
0.880
Bra008259
Brassica rapa
Bra008259
I
0.885
Bra003023
Brassica rapa
Bra003023
I
0.898
Bo9g113820
Brassica oleracea
Bo9g113820
I
0.923
CUC2
Arabidopsis lyrata
Al_scaffold_0008_1815
I
0.923
VIT_14s0108g01070
Vitis vinifera
VIT_14s0108g01070
I
0.901
PRUPE_ppa007883mg
Prunus persica
PRUPE_ppa007883mg
I
0.900
PRUPE_ppa007653mg
Prunus persica
PRUPE_ppa007653mg
I
0.895
POPTR_0011s11600
Populus trichocarpa
POPTR_0011s11600
I
0.929
POPTR_0005s27720
Populus trichocarpa
POPTR_0005s27720
I
0.898
POPTR_0002s00730
Populus trichocarpa
POPTR_0002s00730
I
0.895
POPTR_0001s40680
Populus trichocarpa
POPTR_0001s40680
I
0.903
PGSC0003DMG400001338
Solanum tuberosum
PGSC0003DMG400001338
I
0.880
OS09G0497900
Oryza sativa
OS09G0497900
I
0.905
OS06G0344900
Oryza sativa
OS06G0344900
I
0.908
ORUFI09G16430
Oryza rufipogon
ORUFI09G16430
I
0.905
PRUPE_ppa026810mg
Prunus persica
PRUPE_ppa026810mg
I
0.921
Sb02g028870
Sorghum bicolor
Sb02g028870
I
0.905
Sb08g006330
Sorghum bicolor
Sb08g006330
I
0.893
TRIUR3_20591
Triticum urartu
TRIUR3_20591
I
0.879
Traes_5BL_657BF1497
Triticum aestivum
Traes_5BL_657BF1497
I
0.878
TCM_034835
Theobroma cacao
TCM_034835
I
0.895
TCM_031619
Theobroma cacao
TCM_031619
I
0.920
TCM_018621
Theobroma cacao
TCM_018621
I
0.895
TCM_014073
Theobroma cacao
TCM_014073
I
0.893
Solyc07g062840.2
Solanum lycopersicum
Solyc07g062840.2
I
0.926
Solyc02g088180.2
Solanum lycopersicum
Solyc02g088180.2
I
0.880
Si030187m.g
Setaria italica
Si030187m.g
I
0.905
Si007886m.g
Setaria italica
Si007886m.g
I
0.892
ORUFI06G14810
Oryza rufipogon
ORUFI06G14810
I
0.908
ORGLA09G0117400
Oryza glaberrima
ORGLA09G0117400
I
0.905
OB06G22100
Oryza brachyantha
OB06G22100
I
0.908
OB04G22290
Oryza brachyantha
OB04G22290
I
0.880
MTR_6g012670
Medicago truncatula
MTR_6g012670
I
0.874
MTR_4g108760
Medicago truncatula
MTR_4g108760
I
0.872
MTR_3g435150
Medicago truncatula
MTR_3g435150
I
0.882
MTR_3g070030
Medicago truncatula
MTR_3g070030
I
0.902
MTR_2g078700
Medicago truncatula
MTR_2g078700
I
0.901
MLOC_68185
Hordeum vulgare
MLOC_68185
I
0.879
LPERR09G11330
Leersia perrieri
LPERR09G11330
I
0.905
LPERR08G17020
Leersia perrieri
LPERR08G17020
I
0.876
OBART06G13940
Oryza barthii
OBART06G13940
I
0.908
OBART09G15220
Oryza barthii
OBART09G15220
I
0.905
OGLUM06G14810
Oryza glumaepatula
OGLUM06G14810
I
0.908
ORGLA06G0124600
Oryza glaberrima
ORGLA06G0124600
I
0.908
OPUNC09G13640
Oryza punctata
OPUNC09G13640
I
0.905
OPUNC06G13130
Oryza punctata
OPUNC06G13130
I
0.908
OPUNC04G12870
Oryza punctata
OPUNC04G12870
I
0.899
ONIVA09G15800
Oryza nivara
ONIVA09G15800
I
0.905
ONIVA03G33370
Oryza nivara
ONIVA03G33370
I
0.908
OMERI07G04410
Oryza meridionalis
OMERI07G04410
I
0.905
OLONG_019251
Oryza longistaminata
OLONG_019251
I
0.908
OLONG_009674
Oryza longistaminata
OLONG_009674
I
0.905
OGLUM09G15820
Oryza glumaepatula
OGLUM09G15820
I
0.905
LPERR06G12840
Leersia perrieri
LPERR06G12840
I
0.907