CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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myrf
(
Danio rerio
)
Ndt80/PhoG
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF05224 (NDT80_PhoG)
IPR007888
ENSDARG00000078676
T299754_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
myrf
M02384_2.00
Danio rerio
TGGTACCR
YGGTACCA
PBM
Weirauch et al.(2014)
pTH8654
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYRF
M02385_2.00
Homo sapiens
TGGTACCA
TGGTACCA
PBM
Weirauch et al.(2014)
pTH9310
0.825
0.825
Myrf
M02386_2.00
Mus musculus
NNGTRHSNNN
NNNSDYACNN
PBM
Weirauch et al.(2014)
pTH8554
0.825
0.825
For this family, TFs with SR scores >
0.700
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02384_2.00
Ndt80/PhoG
51
198
AFVCQKKNHFQVTVYIGMPGDPKYVKTSDGLQPIDCFYLKLNGVKLEAMNQSINVEQSQSDRSKRPFKPVLVTLPPEQVTKVTVGRLHFSETTANNMRKKGKPNPDQRYFMLVVSLQAQCHSQSFSVAAHVSERIIVRASNPGQFESD
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000104600
Ndt80/PhoG
322
469
AFVCQKKNHFQVTVYIGMPGDPKYVKTSDGLQPIDCFYLKLNGVKLEAMNQSINVEQSQSDRSKRPFKPVLVTLPPEQVTKVTVGRLHFSETTANNMRKKGKPNPDQRYFMLVVSLQAQCHSQSFSVAAHVSERIIVRASNPGQFESD
ENSDARP00000127515
Ndt80/PhoG
322
469
AFVCQKKNHFQVTVYIGMPGDPKYVKTSDGLQPIDCFYLKLNGVKLEAMNQSINVEQSQSDRSKRPFKPVLVTLPPEQVTKVTVGRLHFSETTANNMRKKGKPNPDQRYFMLVVSLQAQCHSQSFSVAAHVSERIIVRASNPGQFESD
Links
Other
Ndt80/PhoG
family TFs
Other
Danio rerio
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy