POPTR_0010s19600 (Populus trichocarpa)
NFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01422 (zf-NF-X1) IPR000967 POPTR_0010s19600 T300767_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s19600.1 NFX 202 219
POPTR_0010s19600.1 NFX 254 272
POPTR_0010s19600.1 NFX 307 325
POPTR_0010s19600.1 NFX 361 380
POPTR_0010s19600.1 NFX 414 432
POPTR_0010s19600.1 NFX 435 459
POPTR_0010s19600.1 NFX 506 518
POPTR_0010s19600.1 NFX 609 620
POPTR_0010s19600.1 NFX 653 670
POPTR_0010s19600.1 NFX 705 735

Links

Other NFX family TFs
Other Populus trichocarpa TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0061s0270 Salix purpurea SapurV1A.0061s0270 N 0.929
Bra009123 Brassica rapa Bra009123 N 0.821
Bo9g177030 Brassica oleracea Bo9g177030 N 0.816
28162.m000128 Ricinus communis 28162.m000128 N 0.809
Si000223m.g Setaria italica Si000223m.g N 0.795
Gorai.010G197800 Gossypium raimondii Gorai.010G197800 N 0.778
Eucgr.J00206 Eucalyptus grandis Eucgr.J00206 N 0.772
evm.TU.supercontig_19.173 Carica papaya evm.TU.supercontig_19.173 N 0.772
Ciclev10030684m.g Citrus clementina Ciclev10030684m.g N 0.770
ATNFXL2 Vitis vinifera VIT_13s0067g00920 N 0.766
LjT47B05.50.nd Lotus japonicus LjT47B05.50.nd N 0.764
TCM_042496 Theobroma cacao TCM_042496 N 0.754
Ca_13412 Cicer arietinum Ca_13412 N 0.753
gene20971-v1.0-hybrid Fragaria vesca gene20971-v1.0-hybrid N 0.753
MTR_3g070780 Medicago truncatula MTR_3g070780 N 0.747
PK03289.1 Cannabis sativa PK03289.1 N 0.741
GRMZM2G139369 Zea mays GRMZM2G139369 N 0.740
Solyc06g051570.2 Solanum lycopersicum Solyc06g051570.2 N 0.740
Pavir.J07154 Panicum virgatum Pavir.J07154 N 0.740
LPERR01G03530 Leersia perrieri LPERR01G03530 N 0.736
OPUNC01G03540 Oryza punctata OPUNC01G03540 N 0.730
ORGLA01G0034200 Oryza glaberrima ORGLA01G0034200 N 0.724
OBART01G03880 Oryza barthii OBART01G03880 N 0.724
OB01G13760 Oryza brachyantha OB01G13760 N 0.724
OGLUM01G04180 Oryza glumaepatula OGLUM01G04180 N 0.724
OLONG_021562 Oryza longistaminata OLONG_021562 N 0.724
ORUFI01G03990 Oryza rufipogon ORUFI01G03990 N 0.724
ONIVA01G04320 Oryza nivara ONIVA01G04320 N 0.724
OS01G0158900 Oryza sativa OS01G0158900 N 0.724
Sb03g005310 Sorghum bicolor Sb03g005310 N 0.722
BGIOSGA002351 Oryza indica BGIOSGA002351 N 0.718
cassava20878.m1 Manihot esculenta cassava20878.m1 N 0.710
LotgiG209369 Lottia gigantea LotgiG209369 N 0.707
Cagra.1504s0067 Capsella grandiflora Cagra.1504s0067 N 0.703
Carubv10003051m.g Capsella rubella Carubv10003051m.g N 0.703
Nfxl1 Rattus norvegicus ENSRNOG00000058588 N 0.701