CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG06609
(
Caenorhabditis briggsae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBG06609
T301485_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.889
0.571
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG06609
Nuclear receptor
9
81
DICKICKSPAHGLHFGVMTCRACAAFFRRTIVDNRENKYLCRRDDNSCSINPDDRYHCKSCRFKKCISLNMTP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis briggsae
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBG06599
Caenorhabditis briggsae
CBG06599
I
0.995
SVUK_0002058501
Strongylus vulgaris
SVUK_0002058501
I
0.938
NBR_0001218401
Nippostrongylus brasiliensis
NBR_0001218401
I
0.925
HCOI00483700
Haemonchus contortus
HCOI00483700
I
0.919
ANCCEY_13226
Ancylostoma ceylanicum
ANCCEY_13226
I
0.919
HPLM_0000277901
Haemonchus placei
HPLM_0000277901
I
0.919
CRE30948
Caenorhabditis remanei
CRE30948
I
0.903
SVUK_0001603001
Strongylus vulgaris
SVUK_0001603001
I
0.903
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.895
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.889
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.885
CRE15644
Caenorhabditis remanei
CRE15644
I
0.871
CBN23838
Caenorhabditis brenneri
CBN23838
I
0.871
CBG20729
Caenorhabditis briggsae
CBG20729
I
0.869
ANCCEY_07914
Ancylostoma ceylanicum
ANCCEY_07914
I
0.866
CRE05044
Caenorhabditis remanei
CRE05044
I
0.850
ACOC_0000492601
Angiostrongylus costaricensis
ACOC_0000492601
I
0.844
CBG20727
Caenorhabditis briggsae
CBG20727
I
0.843
CRE15675
Caenorhabditis remanei
CRE15675
I
0.830
L596_g14586
Steinernema carpocapsae
L596_g14586
I
0.830
PEQ_0000560101
Parascaris equorum
PEQ_0000560101
I
0.823
HPLM_0000974301
Haemonchus placei
HPLM_0000974301
I
0.820
HCOI01190000
Haemonchus contortus
HCOI01190000
I
0.820
nhr-54
Caenorhabditis elegans
WBGene00003644
I
0.819
CBG22870
Caenorhabditis briggsae
CBG22870
I
0.813
L893_g18997
Steinernema glaseri
L893_g18997
I
0.811
nhr-170
Caenorhabditis elegans
WBGene00008309
I
0.810
nhr-231
Caenorhabditis elegans
WBGene00012449
I
0.807
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.805
CBG27350
Caenorhabditis briggsae
CBG27350
I
0.799
L596_g14588
Steinernema carpocapsae
L596_g14588
I
0.790
CRE08749
Caenorhabditis remanei
CRE08749
I
0.790
nhr-130
Caenorhabditis elegans
WBGene00003720
I
0.788
TCNE_0001716801
Toxocara canis
TCNE_0001716801
N
0.786
ASU_09680
Ascaris suum
ASU_09680
N
0.785
nhr-213
Caenorhabditis elegans
WBGene00011520
I
0.776
nhr-110
Caenorhabditis elegans
WBGene00003700
I
0.775
CJA09697
Caenorhabditis japonica
CJA09697
I
0.773
nhr-178
Caenorhabditis elegans
WBGene00017510
I
0.770
L898_g12798
Steinernema monticolum
L898_g12798
I
0.768
CBG15881
Caenorhabditis briggsae
CBG15881
I
0.765
CBG06387
Caenorhabditis briggsae
CBG06387
I
0.759
CRE08691
Caenorhabditis remanei
CRE08691
I
0.758
NBR_0001834701
Nippostrongylus brasiliensis
NBR_0001834701
I
0.756
CBN13569
Caenorhabditis brenneri
CBN13569
I
0.752
CJA19466
Caenorhabditis japonica
CJA19466
I
0.751
CRE18430
Caenorhabditis remanei
CRE18430
I
0.751
nhr-212
Caenorhabditis elegans
WBGene00020153
I
0.749
CBG06611
Caenorhabditis briggsae
CBG06611
I
0.749
CBG06601
Caenorhabditis briggsae
CBG06601
I
0.749