CBG06611 (Caenorhabditis briggsae)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBG06611 T301486_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
eukaryotic translation initiation factor 4A-1

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-142
M00703_2.00 		Caenorhabditis elegans
RGTCACAR
YTGTGACY		 PBM
Narasimhan et al.(2015)
pTH10714 		0.935 0.629
nhr-232
M00700_2.00 		Caenorhabditis elegans
NNTNTDWYN
NRWHANANN		 PBM
Narasimhan et al.(2015)
pTH10647 		0.887 0.571
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBG06611 Nuclear receptor 36 108

Links

Other Nuclear receptor family TFs
Other Caenorhabditis briggsae TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG06601 Caenorhabditis briggsae CBG06601 I 0.993
CRE18430 Caenorhabditis remanei CRE18430 I 0.993
CBG22870 Caenorhabditis briggsae CBG22870 I 0.985
nhr-178 Caenorhabditis elegans WBGene00017510 I 0.985
CRE08691 Caenorhabditis remanei CRE08691 I 0.977
nhr-102 Caenorhabditis elegans WBGene00003692 I 0.971
nhr-213 Caenorhabditis elegans WBGene00011520 I 0.968
CJA09697 Caenorhabditis japonica CJA09697 I 0.958
nhr-142 Caenorhabditis elegans WBGene00018430 D 0.935
CBN28290 Caenorhabditis brenneri CBN28290 I 0.933
CBN21486 Caenorhabditis brenneri CBN21486 I 0.933
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I 0.932
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.932
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.932
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.932
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I 0.931
L596_g14586 Steinernema carpocapsae L596_g14586 I 0.928
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.925
CRE31070 Caenorhabditis remanei CRE31070 I 0.901
CBG09320 Caenorhabditis briggsae CBG09320 I 0.901
CJA28065 Caenorhabditis japonica CJA28065 I 0.900
CRE30948 Caenorhabditis remanei CRE30948 I 0.895
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I 0.893
nhr-232 Caenorhabditis elegans WBGene00012494 D 0.887
CBG09567 Caenorhabditis briggsae CBG09567 I 0.886
nhr-231 Caenorhabditis elegans WBGene00012449 I 0.881
L898_g3512 Steinernema monticolum L898_g3512 I 0.873
CBG20729 Caenorhabditis briggsae CBG20729 I 0.873
CBG20727 Caenorhabditis briggsae CBG20727 I 0.871
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I 0.870
L898_g12798 Steinernema monticolum L898_g12798 I 0.865
CBN23838 Caenorhabditis brenneri CBN23838 I 0.865
CRE15644 Caenorhabditis remanei CRE15644 I 0.865
CRE15675 Caenorhabditis remanei CRE15675 I 0.854
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I 0.844
nhr-170 Caenorhabditis elegans WBGene00008309 I 0.843
EVEC_0000956701 Enterobius vermicularis EVEC_0000956701 I 0.840
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I 0.836
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I 0.815
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I 0.810
GPLIN_000282900 Globodera pallida GPLIN_000282900 I 0.807
nhr-45 Caenorhabditis elegans WBGene00003635 I 0.804
CBN12210 Caenorhabditis brenneri CBN12210 I 0.804
CBG14515 Caenorhabditis briggsae CBG14515 I 0.804
CJA02156 Caenorhabditis japonica CJA02156 I 0.804
CRE00301 Caenorhabditis remanei CRE00301 I 0.804
L892_g2782 Steinernema scapterisci L892_g2782 I 0.803
Minc14668 Meloidogyne incognita Minc14668 I 0.801
L889_g6696 Steinernema feltiae L889_g6696 I 0.799
L898_g3514 Steinernema monticolum L898_g3514 I 0.794
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I 0.793
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I 0.791
L596_g14588 Steinernema carpocapsae L596_g14588 I 0.785
nhr-54 Caenorhabditis elegans WBGene00003644 I 0.780
HCOI01190000 Haemonchus contortus HCOI01190000 I 0.762
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I 0.762
L889_g6692 Steinernema feltiae L889_g6692 I 0.762
PPA14290 Pristionchus pacificus PPA14290 I 0.761
L889_g6695 Steinernema feltiae L889_g6695 I 0.759
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I 0.759
L892_g2781 Steinernema scapterisci L892_g2781 I 0.753
CBG06609 Caenorhabditis briggsae CBG06609 I 0.749
CBG06599 Caenorhabditis briggsae CBG06599 I 0.749
L892_g14834 Steinernema scapterisci L892_g14834 N 0.749
SMUV_0000241501 Syphacia muris SMUV_0000241501 N 0.747
L898_g3515 Steinernema monticolum L898_g3515 I 0.746
L596_g14589 Steinernema carpocapsae L596_g14589 I 0.746