CBN08904 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN08904 T301721_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
daf-12
M00685_2.00
Caenorhabditis elegans
NDAGTRCANN

NNTGYACTHN
PBM
Narasimhan et al.(2015)
pTH9108
0.981 0.886
daf-12
M08159_2.00
Caenorhabditis elegans
GWGYGYGYKTGYDKB

VMHRCAMRCRCRCWC
ChIP-seq
Mathelier et al.(2014)
MA0538.1
0.981 0.886
Hr96
M03940_2.00
Drosophila melanogaster
YVRGTRCANVTGYACYBR

YVRGTRCABNTGYACYBR
SELEX
Nitta et al.(2015)
Hr96_1
0.911 0.686
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN08904 Nuclear receptor 50 119

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29650.m000275 Ricinus communis 29650.m000275 N 0.000
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.000
AMTR_s00067p00064350 Amborella trichopoda AMTR_s00067p00064350 N 0.000
Aquca_009_00966 Aquilegia coerulea Aquca_009_00966 I 0.000
Aquca_017_00744 Aquilegia coerulea Aquca_017_00744 N 0.000
BGIOSGA007201 Oryza indica BGIOSGA007201 N 0.000
BGIOSGA011685 Oryza indica BGIOSGA011685 I 0.000
BGIOSGA016756 Oryza indica BGIOSGA016756 N 0.000
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.000
Bo3g065240 Brassica oleracea Bo3g065240 N 0.000
Bostr.0556s0555 Boechera stricta Bostr.0556s0555 I 0.000
Bra001480 Brassica rapa Bra001480 N 0.000
Bra034713 Brassica rapa Bra034713 N 0.000
BRADI5G15587 Brachypodium distachyon BRADI5G15587 N 0.000
cassava41082.m1 Manihot esculenta cassava41082.m1 N 0.000
Ca_07743 Cicer arietinum Ca_07743 N 0.000
Ciclev10021312m.g Citrus clementina Ciclev10021312m.g N 0.000
Cla023574 Citrullus lanatus Cla023574 N 0.000
Eucgr.K03256 Eucalyptus grandis Eucgr.K03256 N 0.000
evm.TU.supercontig_165.12 Carica papaya evm.TU.supercontig_165.12 N 0.000
F775_20638 Aegilops tauschii F775_20638 I 0.000
gene08112-v1.0-hybrid Fragaria vesca gene08112-v1.0-hybrid N 0.000
GLYMA03G32116 Glycine max GLYMA03G32116 N 0.000
GLYMA08G18470 Glycine max GLYMA08G18470 N 0.000
GLYMA10G04350 Glycine max GLYMA10G04350 N 0.000
GLYMA13G18620 Glycine max GLYMA13G18620 N 0.000
GLYMA19G34881 Glycine max GLYMA19G34881 N 0.000
Gorai.001G178800 Gossypium raimondii Gorai.001G178800 N 0.000
Gorai.001G254300 Gossypium raimondii Gorai.001G254300 N 0.000
Gorai.004G221300 Gossypium raimondii Gorai.004G221300 N 0.000
Gorai.007G147300 Gossypium raimondii Gorai.007G147300 N 0.000
GRMZM2G043813 Zea mays GRMZM2G043813 N 0.000
GRMZM2G062009 Zea mays GRMZM2G062009 N 0.000
GRMZM2G081930 Zea mays GRMZM2G081930 N 0.000
GRMZM2G139700 Zea mays GRMZM2G139700 I 0.000
GSMUA_Achr11G00880_001 Musa acuminata GSMUA_Achr11G00880_001 N 0.000
GSMUA_Achr11G22760_001 Musa acuminata GSMUA_Achr11G22760_001 N 0.000
GSMUA_Achr1G10860_001 Musa acuminata GSMUA_Achr1G10860_001 N 0.000
GSMUA_Achr1G20530_001 Musa acuminata GSMUA_Achr1G20530_001 N 0.000
GSMUA_Achr5G18670_001 Musa acuminata GSMUA_Achr5G18670_001 N 0.000
GSMUA_Achr6G36550_001 Musa acuminata GSMUA_Achr6G36550_001 N 0.000
GSMUA_Achr8G18980_001 Musa acuminata GSMUA_Achr8G18980_001 N 0.000
GSMUA_AchrUn_randomG02760_001 Musa acuminata GSMUA_AchrUn_randomG02760_001 N 0.000
GSMUA_AchrUn_randomG17260_001 Musa acuminata GSMUA_AchrUn_randomG17260_001 N 0.000
LPERR02G20100 Leersia perrieri LPERR02G20100 N 0.000
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.000
MDP0000697030 Malus domestica MDP0000697030 N 0.000
mgf018312m Mimulus guttatus mgf018312m N 0.000
MLOC_12466 Hordeum vulgare MLOC_12466 N 0.000
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.000
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.000
MTR_1g069805 Medicago truncatula MTR_1g069805 N 0.000
MTR_7g097090 Medicago truncatula MTR_7g097090 N 0.000
OB0039G10090 Oryza brachyantha OB0039G10090 N 0.000
OB02G31950 Oryza brachyantha OB02G31950 N 0.000
OB03G10720 Oryza brachyantha OB03G10720 N 0.000
OB04G25790 Oryza brachyantha OB04G25790 N 0.000
OBART03G00700 Oryza barthii OBART03G00700 I 0.000
OBART04G18700 Oryza barthii OBART04G18700 N 0.000
OGLUM02G24950 Oryza glumaepatula OGLUM02G24950 N 0.000
OGLUM03G00640 Oryza glumaepatula OGLUM03G00640 I 0.000
OGLUM04G18750 Oryza glumaepatula OGLUM04G18750 N 0.000
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.000
OLONG_000596 Oryza longistaminata OLONG_000596 N 0.000
OLONG_011232 Oryza longistaminata OLONG_011232 N 0.000
OLONG_023103 Oryza longistaminata OLONG_023103 I 0.000
OLONG_025732 Oryza longistaminata OLONG_025732 I 0.000
OMERI02G24100 Oryza meridionalis OMERI02G24100 N 0.000
OMERI03G00460 Oryza meridionalis OMERI03G00460 N 0.000
ONIVA02G26880 Oryza nivara ONIVA02G26880 N 0.000
ONIVA04G01950 Oryza nivara ONIVA04G01950 N 0.000
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.000
OPUNC03G00610 Oryza punctata OPUNC03G00610 N 0.000
OPUNC04G16450 Oryza punctata OPUNC04G16450 N 0.000
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.000
ORGLA03G0005100 Oryza glaberrima ORGLA03G0005100 I 0.000
ORGLA04G0158100 Oryza glaberrima ORGLA04G0158100 N 0.000
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.000
ORUFI02G25930 Oryza rufipogon ORUFI02G25930 N 0.000
ORUFI04G20200 Oryza rufipogon ORUFI04G20200 N 0.000
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.000
OS04G0515900 Oryza sativa OS04G0515900 N 0.000
OS08G0511200 Oryza sativa OS08G0511200 I 0.000
Pavir.Aa01668 Panicum virgatum Pavir.Aa01668 N 0.000
Pavir.Ab02337 Panicum virgatum Pavir.Ab02337 N 0.000
Pavir.Ga01251 Panicum virgatum Pavir.Ga01251 N 0.000
Pavir.Gb00655 Panicum virgatum Pavir.Gb00655 N 0.000
Pavir.Ib03261 Panicum virgatum Pavir.Ib03261 N 0.000
Pavir.J11268 Panicum virgatum Pavir.J11268 N 0.000
PDK_20s1301681g003 Phoenix dactylifera PDK_20s1301681g003 N 0.000
PDK_20s1648061g001 Phoenix dactylifera PDK_20s1648061g001 N 0.000
PGSC0003DMG400009920 Solanum tuberosum PGSC0003DMG400009920 I 0.000
PGSC0003DMG400010294 Solanum tuberosum PGSC0003DMG400010294 N 0.000
PGSC0003DMG400022134 Solanum tuberosum PGSC0003DMG400022134 N 0.000
PGSC0003DMG400025505 Solanum tuberosum PGSC0003DMG400025505 N 0.000
PK19051.1 Cannabis sativa PK19051.1 N 0.000
Pm020580 Prunus mume Pm020580 N 0.000
PRUPE_ppa009628mg Prunus persica PRUPE_ppa009628mg N 0.000
SapurV1A.0006s0680 Salix purpurea SapurV1A.0006s0680 N 0.000
SapurV1A.0085s0410 Salix purpurea SapurV1A.0085s0410 N 0.000
SapurV1A.0233s0110 Salix purpurea SapurV1A.0233s0110 N 0.000
Sb04g026440 Sorghum bicolor Sb04g026440 N 0.000
Sb10g027100 Sorghum bicolor Sb10g027100 N 0.000
Si010799m.g Setaria italica Si010799m.g N 0.000
Si018001m.g Setaria italica Si018001m.g N 0.000
Si036835m.g Setaria italica Si036835m.g N 0.000
Solyc06g008360.2 Solanum lycopersicum Solyc06g008360.2 N 0.000
Solyc09g025310.2 Solanum lycopersicum Solyc09g025310.2 N 0.000
TCM_003998 Theobroma cacao TCM_003998 N 0.000
Thhalv10021297m.g Eutrema salsugineum Thhalv10021297m.g N 0.000
Traes_2BL_D718E27A9 Triticum aestivum Traes_2BL_D718E27A9 N 0.000
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.000
TRIUR3_33179 Triticum urartu TRIUR3_33179 N 0.000