CBN22974 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN22974 T301827_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
nhr-70
M00695_2.00
Caenorhabditis elegans
NYTGTAGYYD

HRRCTACARN
PBM
Narasimhan et al.(2015)
pTH9174
0.810 0.825
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN22974 Nuclear receptor 8 64

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29685.m000503 Ricinus communis 29685.m000503 N 0.000
29889.m003255 Ricinus communis 29889.m003255 N 0.000
Aquca_008_00101 Aquilegia coerulea Aquca_008_00101 N 0.000
Aquca_025_00175 Aquilegia coerulea Aquca_025_00175 N 0.000
FRS11 Arabidopsis thaliana AT1G10240 N 0.000
BRADI5G11330 Brachypodium distachyon BRADI5G11330 N 0.000
cassava25471.m1 Manihot esculenta cassava25471.m1 N 0.000
cassava28226.m1 Manihot esculenta cassava28226.m1 N 0.000
Ciclev10000456m.g Citrus clementina Ciclev10000456m.g N 0.000
Ciclev10004395m.g Citrus clementina Ciclev10004395m.g N 0.000
Cucsa.019230 Cucumis sativus Cucsa.019230 N 0.000
Eucgr.G00085 Eucalyptus grandis Eucgr.G00085 N 0.000
Eucgr.K03522 Eucalyptus grandis Eucgr.K03522 N 0.000
evm.TU.supercontig_151.57 Carica papaya evm.TU.supercontig_151.57 N 0.000
gene05172-v1.0-hybrid Fragaria vesca gene05172-v1.0-hybrid N 0.000
gene29088-v1.0-hybrid Fragaria vesca gene29088-v1.0-hybrid N 0.000
GLYMA09G04394 Glycine max GLYMA09G04394 N 0.000
GLYMA10G00380 Glycine max GLYMA10G00380 N 0.000
GLYMA15G15450 Glycine max GLYMA15G15450 N 0.000
Gorai.011G195800 Gossypium raimondii Gorai.011G195800 N 0.000
MDP0000233216 Malus domestica MDP0000233216 N 0.000
MDP0000786741 Malus domestica MDP0000786741 N 0.000
MLOC_15705 Hordeum vulgare MLOC_15705 N 0.000
OB04G20960 Oryza brachyantha OB04G20960 N 0.000
orange1.1g004420m.g Citrus sinensis orange1.1g004420m.g N 0.000
orange1.1g047253m.g Citrus sinensis orange1.1g047253m.g N 0.000
PDK_20s1635961g004 Phoenix dactylifera PDK_20s1635961g004 N 0.000
PDK_20s1722071g001 Phoenix dactylifera PDK_20s1722071g001 N 0.000
PDK_20s1756181g001 Phoenix dactylifera PDK_20s1756181g001 N 0.000
PK06148.1 Cannabis sativa PK06148.1 N 0.000
PK12746.1 Cannabis sativa PK12746.1 N 0.000
Pm003854 Prunus mume Pm003854 N 0.000
Pm008290 Prunus mume Pm008290 N 0.000
POPTR_0002s20030 Populus trichocarpa POPTR_0002s20030 N 0.000
POPTR_0004s23620 Populus trichocarpa POPTR_0004s23620 N 0.000
POPTR_0008s10810 Populus trichocarpa POPTR_0008s10810 N 0.000
PRUPE_ppa002379mg Prunus persica PRUPE_ppa002379mg N 0.000
SapurV1A.0158s0480 Salix purpurea SapurV1A.0158s0480 N 0.000
SapurV1A.0225s0240 Salix purpurea SapurV1A.0225s0240 N 0.000
Sb06g017580 Sorghum bicolor Sb06g017580 N 0.000
Solyc01g103180.2 Solanum lycopersicum Solyc01g103180.2 N 0.000
Solyc09g075640.2 Solanum lycopersicum Solyc09g075640.2 N 0.000
TCM_021310 Theobroma cacao TCM_021310 N 0.000
TCM_041141 Theobroma cacao TCM_041141 N 0.000
Traes_2AL_9A4A7514E Triticum aestivum Traes_2AL_9A4A7514E N 0.000
Traes_2BL_C1DE13045 Triticum aestivum Traes_2BL_C1DE13045 N 0.000
TRIUR3_11057 Triticum urartu TRIUR3_11057 N 0.000
VIT_05s0077g01400 Vitis vinifera VIT_05s0077g01400 N 0.000
VIT_07s0005g01120 Vitis vinifera VIT_07s0005g01120 N 0.000
VIT_12s0035g01360 Vitis vinifera VIT_12s0035g01360 N 0.000