CGI_10027671 (Crassostrea gigas)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CGI_10027671 T301918_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NR2E1
M02394_2.00
Homo sapiens
NGAGGTCARN

NYTGACCTCN
PBM
Weirauch et al.(2014)
pTH6281
0.767 0.657
Nr2e1
M00814_2.00
Mus musculus
NNNGTYRNNN

NNNYRACNNN
PBM
Weirauch et al.(2013)
pTH2936
0.767 0.657
A1YGC6_PANPA
M02421_2.00
Pan paniscus
NNGTCANNN

NNNTGACNN
PBM
Weirauch et al.(2014)
pTH5561
0.767 0.657
NR2E1
M03364_2.00
Homo sapiens
WDAAGTCAA

TTGACTTHW
SELEX
Jolma et al.(2013)
NR2E1_1
0.767 0.657
NR2E1
M03365_2.00
Homo sapiens
RARTCAWDAAGTCA

TGACTTHWTGAYTY
SELEX
Jolma et al.(2013)
NR2E1_2
0.767 0.657
Nr2e1
M03427_2.00
Mus musculus
WDAAGTCAW

WTGACTTHW
SELEX
Jolma et al.(2013)
Nr2e1_1
0.767 0.657
Nr2e1
M03428_2.00
Mus musculus
RRGTCAWDAAGTCA

TGACTTHWTGACYY
SELEX
Jolma et al.(2013)
Nr2e1_2
0.767 0.657
NR2E1
M05585_2.00
Homo sapiens
NNAAGTCAN

NTGACTTNN
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
0.767 0.657
NR2E1
M05586_2.00
Homo sapiens
NDAAGTCAN

NTGACTTHN
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
0.767 0.657
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC31559 Nuclear receptor 141 210

Links

Other Nuclear receptor family TFs
Other Crassostrea gigas TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ALNC14_036480 Albugo laibachii ALNC14_036480 N 0.000
AMAG_04835 Allomyces macrogynus AMAG_04835 I 0.000
AMTR_s00069p00130920 Amborella trichopoda AMTR_s00069p00130920 I 0.000
HSF1 Anolis carolinensis ENSACAG00000012604 I 0.000
HSF4 Arabidopsis lyrata fgenesh2_kg.7__342__AT4G36988.1 I 0.000
AT-HSFA3 Arabidopsis lyrata scaffold_600303.1 I 0.000
ATHSFA1E Arabidopsis lyrata fgenesh2_kg.3__246__AT3G02990.1 I 0.000
HSFA1E Arabidopsis thaliana AT3G02990 D 0.000
HSFA1B Arabidopsis thaliana AT5G16820 D 0.000
HSFA3 Arabidopsis thaliana AT5G03720 I 0.000
Bostr.19046s0011 Boechera stricta Bostr.19046s0011 I 0.000
Bostr.2128s0078 Boechera stricta Bostr.2128s0078 I 0.000
BOTBODRAFT_110728 Botryobasidium botryosum BOTBODRAFT_110728 I 0.000
BOTBODRAFT_87464 Botryobasidium botryosum BOTBODRAFT_87464 I 0.000
BRADI1G69407 Brachypodium distachyon BRADI1G69407 I 0.000
BRADI1G08890 Brachypodium distachyon BRADI1G08890 I 0.000
Bo3g055950 Brassica oleracea Bo3g055950 I 0.000
Bo1g155010 Brassica oleracea Bo1g155010 I 0.000
Bo1g021700 Brassica oleracea Bo1g021700 I 0.000
Bo9g181780 Brassica oleracea Bo9g181780 I 0.000
Bo7g118320 Brassica oleracea Bo7g118320 I 0.000
Bra032023 Brassica rapa Bra032023 I 0.000
Bra009515 Brassica rapa Bra009515 I 0.000
Bra013406 Brassica rapa Bra013406 I 0.000
Bra017800 Brassica rapa Bra017800 I 0.000
Bra001071 Brassica rapa Bra001071 I 0.000
Bra021381 Brassica rapa Bra021381 I 0.000
Bra030021 Brassica rapa Bra030021 I 0.000
PK05866.1 Cannabis sativa PK05866.1 I 0.000
Cagra.1194s0002 Capsella grandiflora Cagra.1194s0002 I 0.000
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I 0.000
Carubv10013628m.g Capsella rubella Carubv10013628m.g I 0.000
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.000
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I 0.000
evm.TU.supercontig_55.150 Carica papaya evm.TU.supercontig_55.150 I 0.000
gw1.24.267.1 Chlorella NC64A gw1.24.267.1 I 0.000
fgeneshCV_pg.C_scaffold_14000165 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000165 I 0.000
Ciclev10011531m.g Citrus clementina Ciclev10011531m.g I 0.000
orange1.1g046676m.g Citrus sinensis orange1.1g046676m.g I 0.000
hsf1 Danio rerio ENSDARG00000008818 I 0.000
Eucgr.C03433 Eucalyptus grandis Eucgr.C03433 I 0.000
Thhalv10013758m.g Eutrema salsugineum Thhalv10013758m.g I 0.000
gene30146-v1.0-hybrid Fragaria vesca gene30146-v1.0-hybrid I 0.000
GLYMA13G21490 Glycine max GLYMA13G21490 I 0.000
GLYMA10G07620 Glycine max GLYMA10G07620 I 0.000
Gorai.007G033300 Gossypium raimondii Gorai.007G033300 I 0.000
Gorai.004G257000 Gossypium raimondii Gorai.004G257000 I 0.000
Gorai.006G158000 Gossypium raimondii Gorai.006G158000 I 0.000
LDEC001032 Leptinotarsa decemlineata LDEC001032 I 0.000
Lus10018488.g Linum usitatissimum Lus10018488.g I 0.000
chr5.CM0359.140.nc Lotus japonicus chr5.CM0359.140.nc I 0.000
MDP0000156337 Malus domestica MDP0000156337 I 0.000
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I 0.000
mgf006947m Mimulus guttatus mgf006947m I 0.000
mgf009243m Mimulus guttatus mgf009243m I 0.000
E5Q_06685 Mixia osmundae E5Q_06685 I 0.000
e_gw1.1.2474.1 Mucor circinelloides e_gw1.1.2474.1 I 0.000
gw1.3.1948.1 Mucor circinelloides gw1.3.1948.1 I 0.000
Pavir.J00582 Panicum virgatum Pavir.J00582 I 0.000
estExt_Genewise1.C_310312 Physcomitrella patens estExt_Genewise1.C_310312 I 0.000
estExt_Genewise1.C_840063 Physcomitrella patens estExt_Genewise1.C_840063 I 0.000
PIIN_01911 Piriformospora indica PIIN_01911 I 0.000
Pm026236 Prunus mume Pm026236 I 0.000
Pm010169 Prunus mume Pm010169 I 0.000
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.000
PRUPE_ppa015602mg Prunus persica PRUPE_ppa015602mg I 0.000
RO3G_10499 Rhizopus oryzae RO3G_10499 I 0.000
RHTO_06861 Rhodosporidium toruloides RHTO_06861 I 0.000
RHTO_01429 Rhodosporidium toruloides RHTO_01429 I 0.000
RTG_02995 Rhodotorula glutinis RTG_02995 I 0.000
29092.m000454 Ricinus communis 29092.m000454 I 0.000
SapurV1A.0182s0110 Salix purpurea SapurV1A.0182s0110 I 0.000
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I 0.000
M408DRAFT_64444 Serendipita vermifera M408DRAFT_64444 I 0.000
Solyc09g009100.2 Solanum lycopersicum Solyc09g009100.2 I 0.000
PGSC0003DMG401002683 Solanum tuberosum PGSC0003DMG401002683 I 0.000
PGSC0003DMG400027036 Solanum tuberosum PGSC0003DMG400027036 I 0.000
Sb01g042370 Sorghum bicolor Sb01g042370 I 0.000
TCM_022446 Theobroma cacao TCM_022446 I 0.000
GSTUM_00009357001 Tuber melanosporum GSTUM_00009357001 I 0.000
M407DRAFT_35594 Tulasnella calospora M407DRAFT_35594 I 0.000
VIT_16s0039g01840 Vitis vinifera VIT_16s0039g01840 I 0.000
HSF4 Vitis vinifera VIT_07s0031g00670 I 0.000
hsf1.S Xenopus laevis XB-GENE-997146 I 0.000
hsf1 Xenopus laevis XB-GENE-997145 I 0.000
XP_002942927 Xenopus tropicalis XP_002942927 I 0.000
GRMZM2G026742 Zea mays GRMZM2G026742 I 0.000
GRMZM2G118485 Zea mays GRMZM2G118485 I 0.000