CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CGI_10027671
(
Crassostrea gigas
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CGI_10027671
T301918_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR2E1
M02394_2.00
Homo sapiens
NGAGGTCARN
NYTGACCTCN
PBM
Weirauch et al.(2014)
pTH6281
0.767
0.657
Nr2e1
M00814_2.00
Mus musculus
NNNGTYRNNN
NNNYRACNNN
PBM
Weirauch et al.(2013)
pTH2936
0.767
0.657
A1YGC6_PANPA
M02421_2.00
Pan paniscus
NNGTCANNN
NNNTGACNN
PBM
Weirauch et al.(2014)
pTH5561
0.767
0.657
NR2E1
M03364_2.00
Homo sapiens
WDAAGTCAA
TTGACTTHW
SELEX
Jolma et al.(2013)
NR2E1_1
0.767
0.657
NR2E1
M03365_2.00
Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY
SELEX
Jolma et al.(2013)
NR2E1_2
0.767
0.657
Nr2e1
M03427_2.00
Mus musculus
WDAAGTCAW
WTGACTTHW
SELEX
Jolma et al.(2013)
Nr2e1_1
0.767
0.657
Nr2e1
M03428_2.00
Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY
SELEX
Jolma et al.(2013)
Nr2e1_2
0.767
0.657
NR2E1
M05585_2.00
Homo sapiens
NNAAGTCAN
NTGACTTNN
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
0.767
0.657
NR2E1
M05586_2.00
Homo sapiens
NDAAGTCAN
NTGACTTHN
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
0.767
0.657
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC31559
Nuclear receptor
141
210
ILCLVCGDKASGKHYGVQSCDGCRGFFKRSIRRSLEYVCKENGNCVVDVARRNQCQACRFRKCLEMKMNR
Links
Other
Nuclear receptor
family TFs
Other
Crassostrea gigas
TFs
203 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ALNC14_036480
Albugo laibachii
ALNC14_036480
N
0.000
AMAG_04835
Allomyces macrogynus
AMAG_04835
I
0.000
AMTR_s00069p00130920
Amborella trichopoda
AMTR_s00069p00130920
I
0.000
HSF1
Anolis carolinensis
ENSACAG00000012604
I
0.000
HSF4
Arabidopsis lyrata
fgenesh2_kg.7__342__AT4G36988.1
I
0.000
AT-HSFA3
Arabidopsis lyrata
scaffold_600303.1
I
0.000
ATHSFA1E
Arabidopsis lyrata
fgenesh2_kg.3__246__AT3G02990.1
I
0.000
HSFA1E
Arabidopsis thaliana
AT3G02990
D
0.000
HSFA1B
Arabidopsis thaliana
AT5G16820
D
0.000
HSFA3
Arabidopsis thaliana
AT5G03720
I
0.000
Bostr.19046s0011
Boechera stricta
Bostr.19046s0011
I
0.000
Bostr.2128s0078
Boechera stricta
Bostr.2128s0078
I
0.000
BOTBODRAFT_110728
Botryobasidium botryosum
BOTBODRAFT_110728
I
0.000
BOTBODRAFT_87464
Botryobasidium botryosum
BOTBODRAFT_87464
I
0.000
BRADI1G69407
Brachypodium distachyon
BRADI1G69407
I
0.000
BRADI1G08890
Brachypodium distachyon
BRADI1G08890
I
0.000
Bo3g055950
Brassica oleracea
Bo3g055950
I
0.000
Bo1g155010
Brassica oleracea
Bo1g155010
I
0.000
Bo1g021700
Brassica oleracea
Bo1g021700
I
0.000
Bo9g181780
Brassica oleracea
Bo9g181780
I
0.000
Bo7g118320
Brassica oleracea
Bo7g118320
I
0.000
Bra032023
Brassica rapa
Bra032023
I
0.000
Bra009515
Brassica rapa
Bra009515
I
0.000
Bra013406
Brassica rapa
Bra013406
I
0.000
Bra017800
Brassica rapa
Bra017800
I
0.000
Bra001071
Brassica rapa
Bra001071
I
0.000
Bra021381
Brassica rapa
Bra021381
I
0.000
Bra030021
Brassica rapa
Bra030021
I
0.000
PK05866.1
Cannabis sativa
PK05866.1
I
0.000
Cagra.1194s0002
Capsella grandiflora
Cagra.1194s0002
I
0.000
Cagra.2848s0007
Capsella grandiflora
Cagra.2848s0007
I
0.000
Carubv10013628m.g
Capsella rubella
Carubv10013628m.g
I
0.000
Carubv10024599m.g
Capsella rubella
Carubv10024599m.g
I
0.000
evm.TU.supercontig_124.4
Carica papaya
evm.TU.supercontig_124.4
I
0.000
evm.TU.supercontig_55.150
Carica papaya
evm.TU.supercontig_55.150
I
0.000
gw1.24.267.1
Chlorella NC64A
gw1.24.267.1
I
0.000
fgeneshCV_pg.C_scaffold_14000165
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_14000165
I
0.000
Ciclev10011531m.g
Citrus clementina
Ciclev10011531m.g
I
0.000
orange1.1g046676m.g
Citrus sinensis
orange1.1g046676m.g
I
0.000
hsf1
Danio rerio
ENSDARG00000008818
I
0.000
Eucgr.C03433
Eucalyptus grandis
Eucgr.C03433
I
0.000
Thhalv10013758m.g
Eutrema salsugineum
Thhalv10013758m.g
I
0.000
gene30146-v1.0-hybrid
Fragaria vesca
gene30146-v1.0-hybrid
I
0.000
GLYMA13G21490
Glycine max
GLYMA13G21490
I
0.000
GLYMA10G07620
Glycine max
GLYMA10G07620
I
0.000
Gorai.007G033300
Gossypium raimondii
Gorai.007G033300
I
0.000
Gorai.004G257000
Gossypium raimondii
Gorai.004G257000
I
0.000
Gorai.006G158000
Gossypium raimondii
Gorai.006G158000
I
0.000
LDEC001032
Leptinotarsa decemlineata
LDEC001032
I
0.000
Lus10018488.g
Linum usitatissimum
Lus10018488.g
I
0.000
chr5.CM0359.140.nc
Lotus japonicus
chr5.CM0359.140.nc
I
0.000
MDP0000156337
Malus domestica
MDP0000156337
I
0.000
EuGene.0200010072
Micromonas sp RCC299
EuGene.0200010072
I
0.000
mgf006947m
Mimulus guttatus
mgf006947m
I
0.000
mgf009243m
Mimulus guttatus
mgf009243m
I
0.000
E5Q_06685
Mixia osmundae
E5Q_06685
I
0.000
e_gw1.1.2474.1
Mucor circinelloides
e_gw1.1.2474.1
I
0.000
gw1.3.1948.1
Mucor circinelloides
gw1.3.1948.1
I
0.000
Pavir.J00582
Panicum virgatum
Pavir.J00582
I
0.000
estExt_Genewise1.C_310312
Physcomitrella patens
estExt_Genewise1.C_310312
I
0.000
estExt_Genewise1.C_840063
Physcomitrella patens
estExt_Genewise1.C_840063
I
0.000
PIIN_01911
Piriformospora indica
PIIN_01911
I
0.000
Pm026236
Prunus mume
Pm026236
I
0.000
Pm010169
Prunus mume
Pm010169
I
0.000
PRUPE_ppa006534mg
Prunus persica
PRUPE_ppa006534mg
I
0.000
PRUPE_ppa015602mg
Prunus persica
PRUPE_ppa015602mg
I
0.000
RO3G_10499
Rhizopus oryzae
RO3G_10499
I
0.000
RHTO_06861
Rhodosporidium toruloides
RHTO_06861
I
0.000
RHTO_01429
Rhodosporidium toruloides
RHTO_01429
I
0.000
RTG_02995
Rhodotorula glutinis
RTG_02995
I
0.000
29092.m000454
Ricinus communis
29092.m000454
I
0.000
SapurV1A.0182s0110
Salix purpurea
SapurV1A.0182s0110
I
0.000
SCLCIDRAFT_1218516
Scleroderma citrinum
SCLCIDRAFT_1218516
I
0.000
M408DRAFT_64444
Serendipita vermifera
M408DRAFT_64444
I
0.000
Solyc09g009100.2
Solanum lycopersicum
Solyc09g009100.2
I
0.000
PGSC0003DMG401002683
Solanum tuberosum
PGSC0003DMG401002683
I
0.000
PGSC0003DMG400027036
Solanum tuberosum
PGSC0003DMG400027036
I
0.000
Sb01g042370
Sorghum bicolor
Sb01g042370
I
0.000
TCM_022446
Theobroma cacao
TCM_022446
I
0.000
GSTUM_00009357001
Tuber melanosporum
GSTUM_00009357001
I
0.000
M407DRAFT_35594
Tulasnella calospora
M407DRAFT_35594
I
0.000
VIT_16s0039g01840
Vitis vinifera
VIT_16s0039g01840
I
0.000
HSF4
Vitis vinifera
VIT_07s0031g00670
I
0.000
hsf1.S
Xenopus laevis
XB-GENE-997146
I
0.000
hsf1
Xenopus laevis
XB-GENE-997145
I
0.000
XP_002942927
Xenopus tropicalis
XP_002942927
I
0.000
GRMZM2G026742
Zea mays
GRMZM2G026742
I
0.000
GRMZM2G118485
Zea mays
GRMZM2G118485
I
0.000