CGI_10027671 (Crassostrea gigas)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CGI_10027671 T301918_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR2E1
M02394_2.00 		Homo sapiens
NGAGGTCARN
NYTGACCTCN		 PBM
Weirauch et al.(2014)
pTH6281 		0.767 0.657
Nr2e1
M00814_2.00 		Mus musculus
NNNGTYRNNN
NNNYRACNNN		 PBM
Weirauch et al.(2013)
pTH2936 		0.767 0.657
A1YGC6_PANPA
M02421_2.00 		Pan paniscus
NNGTCANNN
NNNTGACNN		 PBM
Weirauch et al.(2014)
pTH5561 		0.767 0.657
NR2E1
M03364_2.00 		Homo sapiens
WDAAGTCAA
TTGACTTHW		 SELEX
Jolma et al.(2013)
NR2E1_1 		0.767 0.657
NR2E1
M03365_2.00 		Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY		 SELEX
Jolma et al.(2013)
NR2E1_2 		0.767 0.657
Nr2e1
M03427_2.00 		Mus musculus
WDAAGTCAW
WTGACTTHW		 SELEX
Jolma et al.(2013)
Nr2e1_1 		0.767 0.657
Nr2e1
M03428_2.00 		Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY		 SELEX
Jolma et al.(2013)
Nr2e1_2 		0.767 0.657
NR2E1
M05585_2.00 		Homo sapiens
NNAAGTCAN
NTGACTTNN		 SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX 		0.767 0.657
NR2E1
M05586_2.00 		Homo sapiens
NDAAGTCAN
NTGACTTHN		 SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX 		0.767 0.657
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC31559 Nuclear receptor 141 210

Links

Other Nuclear receptor family TFs
Other Crassostrea gigas TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g01655 Acanthocheilonema viteae nAv.1.0.1.g01655 I 0.960
nAv.1.0.1.g01027 Acanthocheilonema viteae nAv.1.0.1.g01027 I 0.756
PNRLIKE Aedes aegypti AAEL008043 I 0.963
ENSAMEG00000008117 Ailuropoda melanoleuca ENSAMEG00000008117 I 0.767
Alligator_sinensis_CCG021621.1 Alligator sinensis Alligator_sinensis_CCG021621.1 I 0.767
ENSAPLG00000010675 Anas platyrhynchos ENSAPLG00000010675 I 0.767
ANCCAN_24590 Ancylostoma caninum ANCCAN_24590 I 0.793
ACAC_0001268701 Angiostrongylus cantonensis ACAC_0001268701 I 0.793
ACOC_0000908001 Angiostrongylus costaricensis ACOC_0000908001 I 0.793
NR2E1 Anolis carolinensis ENSACAG00000005957 I 0.767
AALB002684 Anopheles albimanus AALB002684 I 0.963
AARA001809 Anopheles arabiensis AARA001809 I 0.963
AATE006105 Anopheles atroparvus AATE006105 I 0.963
ACOM033973 Anopheles coluzzii ACOM033973 I 0.963
ACUA020513 Anopheles culicifacies ACUA020513 I 0.963
ADIR010552 Anopheles dirus ADIR010552 I 0.963
AEPI001141 Anopheles epiroticus AEPI001141 I 0.963
AFAF018414 Anopheles farauti AFAF018414 I 0.963
AFUN001116 Anopheles funestus AFUN001116 I 0.963
AGAP001348 Anopheles gambiae AGAP001348 I 0.963
AMAM020935 Anopheles maculatus AMAM020935 I 0.963
AMEC010971 Anopheles melas AMEC010971 I 0.963
AMEM007574 Anopheles merus AMEM007574 I 0.963
AMIN000538 Anopheles minimus AMIN000538 I 0.963
AQUA006534 Anopheles quadriannulatus AQUA006534 I 0.963
ASIS017452 Anopheles sinensis ASIS017452 I 0.963
ASTEI07503 Anopheles stephensi ASTEI07503 I 0.963
GB50458 Apis mellifera GB50458 I 0.749
GB52015 Apis mellifera GB52015 I 0.964
ALUE_0000688601 Ascaris lumbricoides ALUE_0000688601 I 0.970
ALUE_0000403201 Ascaris lumbricoides ALUE_0000403201 I 0.756
ASU_00538 Ascaris suum ASU_00538 I 0.970
ASU_07782 Ascaris suum ASU_07782 I 0.756
ACEP27077 Atta cephalotes ACEP27077 I 0.769
BGLB009763 Biomphalaria glabrata BGLB009763 I 0.971
BGIBMGA000670 Bombyx mori BGIBMGA000670 I 0.969
ENSBTAP00000018594-D1 Bos grunniens ENSBTAP00000018594-D1 I 0.767
NR2E1 Bos taurus ENSBTAG00000013991 I 0.767
e_gw.333.48.1 Branchiostoma floridae e_gw.333.48.1 I 0.973
gw.353.21.1 Branchiostoma floridae gw.353.21.1 I 0.768
e_gw.356.102.1 Branchiostoma floridae e_gw.356.102.1 I 0.768
Bm12516 Brugia malayi Bm12516 I 0.756
Bm2078 Brugia malayi Bm2078 I 0.756
BTMF_0000437701 Brugia timori BTMF_0000437701 I 0.756
BXY_0039800 Bursaphelenchus xylophilus BXY_0039800 I 0.763
BXY_0757200 Bursaphelenchus xylophilus BXY_0757200 I 0.951
CBN10913 Caenorhabditis brenneri CBN10913 I 0.964
CBG06024 Caenorhabditis briggsae CBG06024 I 0.749
CBG16821 Caenorhabditis briggsae CBG16821 I 0.955
nhr-236 Caenorhabditis elegans WBGene00021417 I 0.964
CRE12569 Caenorhabditis remanei CRE12569 I 0.749
NR2E1 Callithrix jacchus ENSCJAG00000005966 I 0.767
Aan_R007044 Calypte anna Aan_R007044 I 0.767
Cflo_11610--XP_624042.1_APIME Camponotus floridanus Cflo_11610--XP_624042.1_APIME I 0.971
Cflo_04264--XP_624265.2_APIME Camponotus floridanus Cflo_04264--XP_624265.2_APIME I 0.769
NR2E1 Canis familiaris ENSCAFG00000003761 I 0.767
CapteG53417 Capitella teleta CapteG53417 I 0.973
NR2E1 Cavia porcellus ENSCPOG00000000097 I 0.767
Cmyd_10021619 Chelonia mydas Cmyd_10021619 I 0.767
ENSCSAG00000015143 Chlorocebus sabaeus ENSCSAG00000015143 I 0.767
NR2E1 Choloepus hoffmanni ENSCHOG00000007344 I 0.767
CLEC008419 Cimex lectularius CLEC008419 I 0.969
CpipJ_CPIJ017884 Culex pipiens CpipJ_CPIJ017884 I 0.963
CPIJ017884 Culex quinquefasciatus CPIJ017884 I 0.963
CGOC_0000088801 Cylicostephanus goldi CGOC_0000088801 I 0.792
KGM_02557 Danaus plexippus KGM_02557 I 0.970
KGM_01261 Danaus plexippus KGM_01261 I 0.751
KGM_12726 Danaus plexippus KGM_12726 I 0.751
nr2e1 Danio rerio ENSDARG00000017107 I 0.762
DAPPUDRAFT_299736 Daphnia pulex DAPPUDRAFT_299736 I 0.758
DAPPUDRAFT_116667 Daphnia pulex DAPPUDRAFT_116667 I 0.985
NR2E1 Dasypus novemcinctus ENSDNOG00000015478 I 0.767
YQE_10677 Dendroctonus ponderosae YQE_10677 I 0.752
YQE_08225 Dendroctonus ponderosae YQE_08225 I 0.975
DICVIV_09548 Dictyocaulus viviparus DICVIV_09548 I 0.789
DILT_0001503801 Diphyllobothrium latum DILT_0001503801 I 0.764
nDi.2.2.2.g01137 Dirofilaria immitis nDi.2.2.2.g01137 I 0.960
nDi.2.2.2.g02808 Dirofilaria immitis nDi.2.2.2.g02808 I 0.756
DME_0000705401 Dracunculus medinensis DME_0000705401 I 0.966
DME_0000202701 Dracunculus medinensis DME_0000202701 I 0.763
EEL_0000988401 Elaeophora elaphi EEL_0000988401 I 0.756
EVEC_0000945501 Enterobius vermicularis EVEC_0000945501 I 0.764
NR2E1 Equus caballus ENSECAG00000018990 I 0.767
NR2E1 Erinaceus europaeus ENSEEUG00000015193 I 0.767
NR2E1 Felis catus ENSFCAG00000002255 I 0.767
ENSFALG00000011755 Ficedula albicollis ENSFALG00000011755 I 0.767
ENSGMOG00000016036 Gadus morhua ENSGMOG00000016036 I 0.767
NR2E1 Gallus gallus ENSGALG00000015305 I 0.767
nr2e1 Gasterosteus aculeatus ENSGACG00000008934 I 0.767
GPLIN_000097300 Globodera pallida GPLIN_000097300 I 0.975
ENSGGOG00000010051 Gorilla gorilla ENSGGOG00000010051 I 0.767
ENSGGOG00000027453 Gorilla gorilla ENSGGOG00000027453 I 0.767
HCOI00499200 Haemonchus contortus HCOI00499200 I 0.793
HCOI00563400 Haemonchus contortus HCOI00563400 I 0.793
HPLM_0000273901 Haemonchus placei HPLM_0000273901 I 0.793
Hsal_12124--XP_624265.2_APIME Harpegnathos saltator Hsal_12124--XP_624265.2_APIME I 0.769
Hsal_03554--XP_624042.1_APIME Harpegnathos saltator Hsal_03554--XP_624042.1_APIME I 0.971
HMEL013397 Heliconius melpomene HMEL013397 I 0.964
HPBE_0001507701 Heligmosomoides bakeri HPBE_0001507701 I 0.790
HelroG148449 Helobdella robusta HelroG148449 I 0.926
HelroG81672 Helobdella robusta HelroG81672 I 0.823
HelroG190681 Helobdella robusta HelroG190681 I 0.933
Hba_13386 Heterorhabditis bacteriophora Hba_13386 I 0.957
NR2E1 Homo sapiens ENSG00000112333 D 0.767
XP_002154441.1 Hydra magnipapillata XP_002154441.1 N 0.948
XP_002156561.1 Hydra magnipapillata XP_002156561.1 I 0.887
ENSSTOG00000007248 Ictidomys tridecemlineatus ENSSTOG00000007248 I 0.767
ISCW009256 Ixodes scapularis ISCW009256 I 0.948
ENSLACG00000015675 Latimeria chalumnae ENSLACG00000015675 I 0.767
ENSLOCG00000016602 Lepisosteus oculatus ENSLOCG00000016602 I 0.767
LDEC003555 Leptinotarsa decemlineata LDEC003555 I 0.758
LDEC002297 Leptinotarsa decemlineata LDEC002297 I 0.975
LotgiG120392 Lottia gigantea LotgiG120392 I 0.989
NR2E1 Loxodonta africana ENSLAFG00000013583 I 0.767
LLOJ008560 Lutzomyia longipalpis LLOJ008560 I 0.747
ENSP00000357979 Macaca fascicularis ENSP00000357979 I 0.767
NR2E1 Macaca mulatta ENSMMUG00000023767 I 0.767
MCINX005281 Melitaea cinxia MCINX005281 I 0.751
maker-nMf.1.1.scaf06872-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf06872-augustus-gene-0.3 N 0.870
augustus_masked-nMf.1.1.scaf00796-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00796-processed-gene-0.1 N 0.954
MhA1_Contig1097.frz3.gene5 Meloidogyne hapla MhA1_Contig1097.frz3.gene5 N 0.931
Minc02801 Meloidogyne incognita Minc02801 N 0.916
NR2E1 Monodelphis domestica ENSMODG00000018005 I 0.767
ENSMPUG00000009805 Mustela putorius furo ENSMPUG00000009805 I 0.767
Nr2e1 Mus musculus ENSMUSG00000019803 D 0.767
NR2E1 Myotis lucifugus ENSMLUG00000005543 I 0.767
NV17364 Nasonia vitripennis NV17364 I 0.974
NEMVEDRAFT_v1g99425 Nematostella vectensis NEMVEDRAFT_v1g99425 I 0.959
NEMVEDRAFT_v1g169225 Nematostella vectensis NEMVEDRAFT_v1g169225 I 0.878
NEMVEDRAFT_v1g132075 Nematostella vectensis NEMVEDRAFT_v1g132075 I 0.962
NBR_0002150401 Nippostrongylus brasiliensis NBR_0002150401 I 0.793
ENSNLEG00000013646 Nomascus leucogenys ENSNLEG00000013646 I 0.767
Ocbimv22038770m.g Octopus bimaculoides Ocbimv22038770m.g I 0.985
OFLC_0001242901 Onchocerca flexuosa OFLC_0001242901 I 0.756
nOo.2.0.1.g00175 Onchocerca ochengi nOo.2.0.1.g00175 I 0.756
WBGene00241769 Onchocerca volvulus WBGene00241769 I 0.756
Ogr18563 Ophisaurus gracilis Ogr18563 I 0.767
ENSONIG00000013281 Oreochromis niloticus ENSONIG00000013281 I 0.767
NR2E1 Oryctolagus cuniculus ENSOCUG00000005853 I 0.767
nr2e1 Oryzias latipes ENSORLG00000013426 I 0.767
NR2E1 Otolemur garnettii ENSOGAG00000011992 I 0.767
ENSOARG00000010848 Ovis aries ENSOARG00000010848 I 0.767
A1YGC6_PANPA Pan paniscus A1YGC6_PANPA D 0.767
NR2E1 Pan troglodytes ENSPTRG00000018472 I 0.767
ENSPANG00000016092 Papio anubis ENSPANG00000016092 I 0.767
PHUM494010 Pediculus humanus PHUM494010 I 0.970
ENSPSIG00000006035 Pelodiscus sinensis ENSPSIG00000006035 I 0.767
PPAI008488 Phlebotomus papatasi PPAI008488 I 0.747
ENSPFOG00000019532 Poecilia formosa ENSPFOG00000019532 I 0.767
Pvit_18941 Pogona vitticeps Pvit_18941 I 0.767
ENSPPYG00000016893 Pongo abelii ENSPPYG00000016893 I 0.767
scaffold431-EXSNAP2012.16 Pristionchus exspectatus scaffold431-EXSNAP2012.16 I 0.929
PPA06908 Pristionchus pacificus PPA06908 I 0.942
PXEA_0002767701 Protopolystoma xenopodis PXEA_0002767701 I 0.947
NR2E1 Pteropus vampyrus ENSPVAG00000001731 I 0.767
Nr2e1 Rattus norvegicus ENSRNOG00000050550 I 0.767
RSKR_0000792200 Rhabditophanes kr3021 RSKR_0000792200 I 0.765
RPRC009755 Rhodnius prolixus RPRC009755 I 0.969
nRc.2.0.1.g02277 Romanomermis culicivorax nRc.2.0.1.g02277 I 0.750
Sakowv30026672m.g Saccoglossus kowalevskii Sakowv30026672m.g I 0.773
Sakowv30030751m.g Saccoglossus kowalevskii Sakowv30030751m.g I 0.972
Sakowv30031927m.g Saccoglossus kowalevskii Sakowv30031927m.g I 0.779
ENSSHAG00000017854 Sarcophilus harrisii ENSSHAG00000017854 I 0.767
SMU15038277 Schmidtea mediterranea SMU15038277 I 0.983
SINV14755 Solenopsis invicta SINV14755 I 0.964
NR2E1 Sorex araneus ENSSARG00000013555 I 0.767
L596_g17227 Steinernema carpocapsae L596_g17227 I 0.745
L889_g22720 Steinernema feltiae L889_g22720 I 0.751
L893_g17786 Steinernema glaseri L893_g17786 I 0.745
L898_g17415 Steinernema monticolum L898_g17415 I 0.750
SMAR005242 Strigamia maritima SMAR005242 I 0.964
SPU_017375 Strongylocentrotus purpuratus SPU_017375 I 0.959
SPU_008936 Strongylocentrotus purpuratus SPU_008936 I 0.747
SPU_027487 Strongylocentrotus purpuratus SPU_027487 I 0.747
SPU_024486 Strongylocentrotus purpuratus SPU_024486 I 0.797
NR2E1 Sus scrofa ENSSSCG00000004384 I 0.767
NR2E1 Taeniopygia guttata ENSTGUG00000012147 I 0.767
NR2F6 Takifugu rubripes ENSTRUG00000004353 I 0.745
nr2e1 Takifugu rubripes ENSTRUG00000001893 I 0.767
TELCIR_04430 Teladorsagia circumcincta TELCIR_04430 I 0.793
TELCIR_00096 Teladorsagia circumcincta TELCIR_00096 I 0.775
tetur03g02550 Tetranychus urticae tetur03g02550 I 0.936
tetur01g02690 Tetranychus urticae tetur01g02690 I 0.784
nr2e1 Tetraodon nigroviridis ENSTNIG00000012282 I 0.767
NR2F6 Tetraodon nigroviridis ENSTNIG00000010182 I 0.745
TCLT_0000820901 Thelazia callipaeda TCLT_0000820901 I 0.756
TCNE_0001744001 Toxocara canis TCNE_0001744001 I 0.970
TCNE_0000809801 Toxocara canis TCNE_0000809801 I 0.756
TC030676 Tribolium castaneum TC030676 I 0.975
TC001069 Tribolium castaneum TC001069 I 0.752
D917_07429 Trichinella nativa D917_07429 I 0.979
EFV59394 Trichinella spiralis EFV59394 I 0.979
TMUE_s0002021300 Trichuris muris TMUE_s0002021300 I 0.966
D918_08129 Trichuris suis D918_08129 I 0.965
TTRE_0000264801 Trichuris trichiura TTRE_0000264801 I 0.965
NR2E1 Tupaia belangeri ENSTBEG00000011676 I 0.767
NR2E1 Tursiops truncatus ENSTTRG00000008863 I 0.767
WUBG_07942 Wuchereria bancrofti WUBG_07942 N 0.842
WUBG_10076 Wuchereria bancrofti WUBG_10076 I 0.756
nr2e1.S Xenopus laevis XB-GENE-864991 I 0.770
nr2e1 Xenopus tropicalis XB-GENE-483554 I 0.770
ENSXMAG00000003283 Xiphophorus maculatus ENSXMAG00000003283 I 0.767
L798_02901 Zootermopsis nevadensis L798_02901 I 0.970