CRE00427 (Caenorhabditis remanei)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CRE00427 T302036_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GA30480
M02409_2.00
Drosophila pseudoobscura
RAGATCAM

KTGATCTY
PBM
Weirauch et al.(2014)
pTH5877
0.980 0.900
Hr51
M06432_2.00
Drosophila melanogaster
AMRDATCARARGW

WCYTYTGATHYKT
B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012
0.980 0.886
NR2E3
M00373_2.00
Homo sapiens
NRAGATCAMN

NKTGATCTYN
PBM
Barrera et al.(2016)
NR2E3_REF
0.968 0.843
Nr2e3
M02708_2.00
Mus musculus
AAGCTTD

HAAGCTT
SELEX
Mathelier et al.(2014)
MA0164.1
0.968 0.843
Nr2e3
M09328_2.00
Mus musculus
NAAGTCAAAARKCA

TGMYTTTTGACTTN
Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C
0.968 0.843
NR2E3
M00372_2.00
Homo sapiens
AAAGATCA

TGATCTTT
PBM
Barrera et al.(2016)
NR2E3_R77Q
0.968 0.829
NR2E3
M00370_2.00
Homo sapiens
NNNWRABATCANN

NNTGATVTYWNNN
PBM
Barrera et al.(2016)
NR2E3_R76Q
0.963 0.829
NR2E3
M00371_2.00
Homo sapiens
NNNHAATWTRTNN

NNAYAWATTDNNN
PBM
Barrera et al.(2016)
NR2E3_R76W
0.957 0.829
NR2E3
M00369_2.00
Homo sapiens
NGGGRTCAHN

NDTGAYCCCN
PBM
Barrera et al.(2016)
NR2E3_G56R
0.950 0.829
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE00427 Nuclear receptor 100 170

Links

Other Nuclear receptor family TFs
Other Caenorhabditis remanei TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PROX1 Homo sapiens ENSG00000117707 D 0.000
PROX2 Ochotona princeps ENSOPRG00000011820 I 0.000
PROX1 Taeniopygia guttata ENSTGUG00000002974 I 0.000
PROX2 Tupaia belangeri ENSTBEG00000014423 I 0.000
ENSSTOG00000023253 Ictidomys tridecemlineatus ENSSTOG00000023253 I 0.000
PROX1 Sus scrofa ENSSSCG00000015584 I 0.000
PROX2 Sus scrofa ENSSSCG00000002373 I 0.000
ENSSHAG00000018304 Sarcophilus harrisii ENSSHAG00000018304 I 0.000
Prox2 Rattus norvegicus ENSRNOG00000005054 I 0.000
ENSTGUG00000012170 Taeniopygia guttata ENSTGUG00000012170 I 0.000
ENSTNIG00000004923 Tetraodon nigroviridis ENSTNIG00000004923 I 0.000
ENSTNIG00000016354 Tetraodon nigroviridis ENSTNIG00000016354 I 0.000
prox1a Tetraodon nigroviridis ENSTNIG00000016378 I 0.000
prox2 Tetraodon nigroviridis ENSTNIG00000017414 I 0.000
ENSTRUG00000010061 Takifugu rubripes ENSTRUG00000010061 I 0.000
ENSTRUG00000012738 Takifugu rubripes ENSTRUG00000012738 I 0.000
prox1a Takifugu rubripes ENSTRUG00000013890 I 0.000
prox2 Takifugu rubripes ENSTRUG00000018353 I 0.000
Prox1 Rattus norvegicus ENSRNOG00000003694 I 0.000
PROX1 Pteropus vampyrus ENSPVAG00000009067 I 0.000
ENSORLG00000001996 Oryzias latipes ENSORLG00000001996 I 0.000
prox1a Oryzias latipes ENSORLG00000014947 I 0.000
prox2 Oryzias latipes ENSORLG00000016587 I 0.000
ENSPANG00000017714 Papio anubis ENSPANG00000017714 I 0.000
ENSPANG00000024084 Papio anubis ENSPANG00000024084 I 0.000
PROX2 Procavia capensis ENSPCAG00000006424 I 0.000
ENSPFOG00000003774 Poecilia formosa ENSPFOG00000003774 I 0.000
ENSPFOG00000014635 Poecilia formosa ENSPFOG00000014635 I 0.000
ENSPFOG00000015503 Poecilia formosa ENSPFOG00000015503 I 0.000
ENSPMAG00000006606 Petromyzon marinus ENSPMAG00000006606 I 0.000
ENSPPYG00000000224 Pongo abelii ENSPPYG00000000224 I 0.000
ENSPPYG00000005992 Pongo abelii ENSPPYG00000005992 I 0.000
ENSPSIG00000008098 Pelodiscus sinensis ENSPSIG00000008098 I 0.000
ENSPSIG00000017015 Pelodiscus sinensis ENSPSIG00000017015 I 0.000
PROX1 Pan troglodytes ENSPTRG00000001974 I 0.000
PROX2 Pan troglodytes ENSPTRG00000006542 I 0.000
PROX2 Pteropus vampyrus ENSPVAG00000000659 I 0.000
PROX2 Tursiops truncatus ENSTTRG00000001912 I 0.000
PROX1 Tursiops truncatus ENSTTRG00000003405 I 0.000
PROX2 Vicugna pacos ENSVPAG00000003072 I 0.000
Myotis_brandtii_PROX2_10012935 Myotis brandtii Myotis_brandtii_PROX2_10012935 I 0.000
Ogr11789 Ophisaurus gracilis Ogr11789 I 0.000
Pvit_00353 Pogona vitticeps Pvit_00353 I 0.000
Pvit_01205 Pogona vitticeps Pvit_01205 I 0.000
e_gw.483.46.1 Branchiostoma floridae e_gw.483.46.1 I 0.000
prox1 Xenopus tropicalis XB-GENE-485327 I 0.000
prox1.L Xenopus laevis XB-GENE-485331 I 0.000
ACOC_0000703501 Angiostrongylus costaricensis ACOC_0000703501 I 0.000
ANCCAN_23624 Ancylostoma caninum ANCCAN_23624 I 0.000
ANCCAN_24706 Ancylostoma caninum ANCCAN_24706 I 0.000
ANCCEY_02877 Ancylostoma ceylanicum ANCCEY_02877 I 0.000
ANCDUO_15205 Ancylostoma duodenale ANCDUO_15205 I 0.000
CGOC_0000822101 Cylicostephanus goldi CGOC_0000822101 I 0.000
D918_02805 Trichuris suis D918_02805 I 0.000
DICVIV_00921 Dictyocaulus viviparus DICVIV_00921 I 0.000
NECAME_07738 Necator americanus NECAME_07738 I 0.000
Myotis_brandtii_Prox1_10018243 Myotis brandtii Myotis_brandtii_Prox1_10018243 I 0.000
Myotis_brandtii_PROX1_10018242 Myotis brandtii Myotis_brandtii_PROX1_10018242 I 0.000
Gfo_R010932 Geospiza fortis Gfo_R010932 I 0.000
ENSXMAG00000003709 Xiphophorus maculatus ENSXMAG00000003709 I 0.000
ENSXMAG00000004000 Xiphophorus maculatus ENSXMAG00000004000 I 0.000
ENSXMAG00000009972 Xiphophorus maculatus ENSXMAG00000009972 I 0.000
ENSXMAG00000014663 Xiphophorus maculatus ENSXMAG00000014663 I 0.000
Aan_R011488 Calypte anna Aan_R011488 I 0.000
Afo_R004723 Aptenodytes forsteri Afo_R004723 I 0.000
Alligator_sinensis_CCG009660.1 Alligator sinensis Alligator_sinensis_CCG009660.1 I 0.000
Alligator_sinensis_CCG014115.1 Alligator sinensis Alligator_sinensis_CCG014115.1 I 0.000
Brh_R001903 Buceros rhinoceros Brh_R001903 I 0.000
Brh_R009461 Buceros rhinoceros Brh_R009461 I 0.000
Cmyd_10008872 Chelonia mydas Cmyd_10008872 I 0.000
Cmyd_10013042 Chelonia mydas Cmyd_10013042 I 0.000
Cmyd_10014540 Chelonia mydas Cmyd_10014540 I 0.000
ENSBTAP00000014573-D1 Bos grunniens ENSBTAP00000014573-D1 I 0.000
ENSP00000355925 Macaca fascicularis ENSP00000355925 I 0.000
ENSP00000405932-D1 Bos grunniens ENSP00000405932-D1 I 0.000
SVUK_0000405601 Strongylus vulgaris SVUK_0000405601 I 0.000
PROX1 Anolis carolinensis ENSACAG00000006174 I 0.000
prox1a Danio rerio ENSDARG00000055158 I 0.000
prox1b Danio rerio ENSDARG00000088810 I 0.000
PROX1 Dasypus novemcinctus ENSDNOG00000001297 I 0.000
PROX2 Dasypus novemcinctus ENSDNOG00000005528 I 0.000
Prox1 Dipodomys ordii ENSDORG00000007622 I 0.000
PROX1 Equus caballus ENSECAG00000019220 I 0.000
ENSECAG00000023529 Equus caballus ENSECAG00000023529 I 0.000
ENSFALG00000006312 Ficedula albicollis ENSFALG00000006312 I 0.000
ENSFALG00000012357 Ficedula albicollis ENSFALG00000012357 I 0.000
PROX2 Felis catus ENSFCAG00000028658 I 0.000
PROX1 Felis catus ENSFCAG00000029702 I 0.000
PROX2 Homo sapiens ENSG00000119608 I 0.000
prox2 Gasterosteus aculeatus ENSGACG00000007538 I 0.000
prox1a Gasterosteus aculeatus ENSGACG00000010140 I 0.000
ENSGACG00000014345 Gasterosteus aculeatus ENSGACG00000014345 I 0.000
PROX1 Gallus gallus ENSGALG00000009791 I 0.000
prox2 Danio rerio ENSDARG00000041952 I 0.000
ENSCSAG00000015530 Chlorocebus sabaeus ENSCSAG00000015530 I 0.000
ENSCSAG00000012283 Chlorocebus sabaeus ENSCSAG00000012283 I 0.000
ENSAMEG00000015776 Ailuropoda melanoleuca ENSAMEG00000015776 I 0.000
ENSAMEG00000018305 Ailuropoda melanoleuca ENSAMEG00000018305 I 0.000
ENSAMXG00000011717 Astyanax mexicanus ENSAMXG00000011717 I 0.000
ENSAMXG00000012231 Astyanax mexicanus ENSAMXG00000012231 I 0.000
ENSAMXG00000014376 Astyanax mexicanus ENSAMXG00000014376 I 0.000
ENSAPLG00000010950 Anas platyrhynchos ENSAPLG00000010950 I 0.000
PROX1 Bos taurus ENSBTAG00000010978 I 0.000
PROX2 Bos taurus ENSBTAG00000015052 I 0.000
PROX1 Canis familiaris ENSCAFG00000012445 I 0.000
PROX2 Canis familiaris ENSCAFG00000016985 I 0.000
PROX2 Choloepus hoffmanni ENSCHOG00000000477 I 0.000
PROX1 Choloepus hoffmanni ENSCHOG00000010660 I 0.000
PROX1 Callithrix jacchus ENSCJAG00000015514 I 0.000
PROX2 Callithrix jacchus ENSCJAG00000020548 I 0.000
PROX2 Cavia porcellus ENSCPOG00000009322 I 0.000
PROX1 Cavia porcellus ENSCPOG00000011987 I 0.000
PROX1 Gorilla gorilla ENSGGOG00000015130 I 0.000
PROX2 Gorilla gorilla ENSGGOG00000022893 I 0.000
ENSGMOG00000001679 Gadus morhua ENSGMOG00000001679 I 0.000
ENSMPUG00000013456 Mustela putorius furo ENSMPUG00000013456 I 0.000
Prox1 Mus musculus ENSMUSG00000010175 I 0.000
Prox2 Mus musculus ENSMUSG00000042320 I 0.000
ENSNLEG00000014435 Nomascus leucogenys ENSNLEG00000014435 I 0.000
ENSNLEG00000016325 Nomascus leucogenys ENSNLEG00000016325 I 0.000
PROX2 Ornithorhynchus anatinus ENSOANG00000009815 I 0.000
ENSOARG00000001473 Ovis aries ENSOARG00000001473 I 0.000
ENSOARG00000009324 Ovis aries ENSOARG00000009324 I 0.000
PROX1 Oryctolagus cuniculus ENSOCUG00000008274 I 0.000
PROX2 Oryctolagus cuniculus ENSOCUG00000021246 I 0.000
PROX2 Otolemur garnettii ENSOGAG00000001327 I 0.000
PROX1 Otolemur garnettii ENSOGAG00000017025 I 0.000
ENSONIG00000012467 Oreochromis niloticus ENSONIG00000012467 I 0.000
ENSONIG00000013518 Oreochromis niloticus ENSONIG00000013518 I 0.000
ENSONIG00000015279 Oreochromis niloticus ENSONIG00000015279 I 0.000
ENSONIG00000020193 Oreochromis niloticus ENSONIG00000020193 I 0.000
ENSMPUG00000009289 Mustela putorius furo ENSMPUG00000009289 I 0.000
ENSMODG00000006137 Monodelphis domestica ENSMODG00000006137 I 0.000
PROX1 Macaca mulatta ENSMMUG00000011914 I 0.000
ENSGMOG00000009022 Gadus morhua ENSGMOG00000009022 I 0.000
ENSGMOG00000011081 Gadus morhua ENSGMOG00000011081 I 0.000
ENSGMOG00000015166 Gadus morhua ENSGMOG00000015166 I 0.000
ENSLACG00000013691 Latimeria chalumnae ENSLACG00000013691 I 0.000
ENSLACG00000018909 Latimeria chalumnae ENSLACG00000018909 I 0.000
PROX1 Loxodonta africana ENSLAFG00000006344 I 0.000
PROX2 Loxodonta africana ENSLAFG00000012545 I 0.000
ENSLOCG00000010701 Lepisosteus oculatus ENSLOCG00000010701 I 0.000
ENSLOCG00000016698 Lepisosteus oculatus ENSLOCG00000016698 I 0.000
ENSMEUG00000002316 Macropus eugenii ENSMEUG00000002316 I 0.000
ENSMEUG00000013465 Macropus eugenii ENSMEUG00000013465 I 0.000
PROX1 Meleagris gallopavo ENSMGAG00000009635 I 0.000
ENSMICG00000006078 Microcebus murinus ENSMICG00000006078 I 0.000
PROX1 Microcebus murinus ENSMICG00000011593 I 0.000
PROX2 Myotis lucifugus ENSMLUG00000005898 I 0.000
PROX1 Myotis lucifugus ENSMLUG00000006993 I 0.000
PROX1 Ochotona princeps ENSOPRG00000005115 I 0.000