CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CRE03966
(
Caenorhabditis remanei
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CRE03966
T302051_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG17178
M02392_2.00
Caenorhabditis briggsae
RAGGTCAH
DTGACCTY
PBM
Weirauch et al.(2014)
pTH6634
0.880
0.629
sex-1
M02416_2.00
Caenorhabditis elegans
RAGGTCAH
DTGACCTY
PBM
Weirauch et al.(2014)
pTH5667
0.878
0.614
Q6VU64_APLCA
M02423_2.00
Aplysia californica
NRGGTCAN
NTGACCYN
PBM
Weirauch et al.(2014)
pTH6055
0.859
0.543
NR6A1
M05627_2.00
Homo sapiens
NNSAAGKTCAAGKKYRN
NYRMMCTTGAMCTTSNN
SELEX
Yin et al.(2017)
NR6A1_eDBD_HT-SELEX
0.845
0.571
NR6A1
M09284_2.00
Homo sapiens
AAGKTCAAGKTCA
TGAMCTTGAMCTT
Misc
Kulakovskiy et al.(2013)
NR6A1_HUMAN.H11MO.0.B
0.845
0.571
NR6A1
M11148_2.00
Homo sapiens
NKCAAGKTCAAGKTCANN
NNTGAMCTTGAMCTTGMN
Transfac
Matys et al.(2006)
V$GCNF_01
0.845
0.571
NR6A1
M11149_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCNF_Q3
0.845
0.571
NR6A1
M05628_2.00
Homo sapiens
NYSAAGKTCAAGKKCRN
NYGMMCTTGAMCTTSRN
SELEX
Yin et al.(2017)
NR6A1_eDBD_Methyl-HT-SELEX
0.845
0.571
Eip78C
M06427_2.00
Drosophila melanogaster
RGGTCA
TGACCY
B1H
Zhu et al.(2011)
Eip78C_SANGER_5_FBgn0004865
0.831
0.543
Eip75B
M03928_2.00
Drosophila melanogaster
MWVTAGGTCANN
NNTGACCTABWK
SELEX
Nitta et al.(2015)
Eip75B_1
0.824
0.557
Eip75B
M03929_2.00
Drosophila melanogaster
AWNTRGGTCANTRGGTCA
TGACCYANTGACCYANWT
SELEX
Nitta et al.(2015)
Eip75B_2
0.824
0.557
Eip75B
M06416_2.00
Drosophila melanogaster
KWWNTRGGTCA
TGACCYANWWM
B1H
Zhu et al.(2011)
Eip75B_SANGER_5_FBgn0000568
0.824
0.557
Smp_105090
M02412_2.00
Schistosoma mansoni
RGGTCANN
NNTGACCY
PBM
Weirauch et al.(2014)
pTH6174
0.804
0.514
NR2C2
M03407_2.00
Homo sapiens
VRGGTCAAAGGTCA
TGACCTTTGACCYB
SELEX
Jolma et al.(2013)
NR2C2_1
0.795
0.529
NR2C2
M05669_2.00
Homo sapiens
NRGGTCRN
NYGACCYN
SELEX
Yin et al.(2017)
NR2C2_eDBD_HT-SELEX
0.795
0.529
NR2C2
M08156_2.00
Homo sapiens
NVRGGTCARAGGKCA
TGMCCTYTGACCYBN
ChIP-seq
Mathelier et al.(2014)
MA0504.1
0.795
0.529
NR2C2
M07990_2.00
Homo sapiens
WBYRCTTCCGGGKYV
BRMCCCGGAAGYRVW
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_TR4_UCD
0.795
0.529
NR2C2
M07991_2.00
Homo sapiens
DWBYRCTTCCGGGKY
RMCCCGGAAGYRVWH
ChIP-seq
Gerstein et al.(2012)
HepG2b_TR4_UCD
0.795
0.529
NR2C2
M07992_2.00
Homo sapiens
WBYRCTTCCGGGKYR
YRMCCCGGAAGYRVW
ChIP-seq
Gerstein et al.(2012)
K562b_TR4_UCD
0.795
0.529
NR2C2
M08221_2.00
Homo sapiens
DWBYDCTTCCGGGKY
RMCCCGGAAGHRVWH
ChIP-seq
Contrino et al.(2012)
Mv97
0.795
0.529
NR2C2
M08222_2.00
Homo sapiens
TCARAGGTCA
TGACCTYTGA
ChIP-seq
Contrino et al.(2012)
Mv98
0.795
0.529
NR2C2
M09292_2.00
Homo sapiens
RBTYMVRGGTCR
YGACCYBKRAVY
Misc
Kulakovskiy et al.(2013)
NR2C2_HUMAN.H11MO.0.B
0.795
0.529
Nr2c2
M09303_2.00
Mus musculus
RRGKSARAGGKCA
TGMCCTYTSMCYY
Misc
Kulakovskiy et al.(2013)
NR2C2_MOUSE.H11MO.0.A
0.795
0.529
NR2C2
M09611_2.00
Homo sapiens
RRGGTCARAGGTCA
TGACCTYTGACCYY
Misc
Heinz et al.(2010)
Hela-TR4_GSE24685
0.795
0.529
NR2C2
M11173_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR2C2_03
0.795
0.529
NR2C2
M11174_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR2C2_04
0.795
0.529
NR2C2
M11175_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_01
0.795
0.529
NR2C2
M11176_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_03
0.795
0.529
NR2C2
M11177_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_Q2_01
0.795
0.529
NR2C2
M11178_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_Q2
0.795
0.529
NR2C2
M11179_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_Q3
0.795
0.529
NR2C2
M05670_2.00
Homo sapiens
NRGGTCRN
NYGACCYN
SELEX
Yin et al.(2017)
NR2C2_eDBD_Methyl-HT-SELEX
0.795
0.529
RARG
M02397_2.00
Homo sapiens
VGGTCANN
NNTGACCB
PBM
Weirauch et al.(2014)
pTH5430
0.794
0.514
Rarg
M00810_2.00
Mus musculus
NNVGKTCANN
NNTGAMCBNN
PBM
Weirauch et al.(2013)
pTH4269
0.794
0.514
RARG
M03391_2.00
Homo sapiens
SRGGTCAAAAGGTCAVD
HBTGACCTTTTGACCYS
SELEX
Jolma et al.(2013)
RARG_1
0.794
0.514
RARG
M03392_2.00
Homo sapiens
RAGGTCAHVHWRAGGTCA
TGACCTYWDBDTGACCTY
SELEX
Jolma et al.(2013)
RARG_2
0.794
0.514
RARG
M03393_2.00
Homo sapiens
RRGGTCAHNNRAGGTCA
TGACCTYNNDTGACCYY
SELEX
Jolma et al.(2013)
RARG_3
0.794
0.514
RARG
M03394_2.00
Homo sapiens
GAGGTCAAAAGGTCAY
RTGACCTTTTGACCTC
SELEX
Jolma et al.(2013)
RARG_4
0.794
0.514
RARG
M03395_2.00
Homo sapiens
RAGGTCAABYARRGKTCA
TGAMCYYTRVTTGACCTY
SELEX
Jolma et al.(2013)
RARG_5
0.794
0.514
RARG
M03396_2.00
Homo sapiens
RAGGTCAHBNVRGGTCA
TGACCYBNVDTGACCTY
SELEX
Jolma et al.(2013)
RARG_6
0.794
0.514
Rarg
M03416_2.00
Mus musculus
RRGGTCAAAAGGTCAH
DTGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
Rarg_1
0.794
0.514
Rarg
M03417_2.00
Mus musculus
RAGGTCAWVHAAAGGTCA
TGACCTTTDBWTGACCTY
SELEX
Jolma et al.(2013)
Rarg_2
0.794
0.514
Rarg
M03418_2.00
Mus musculus
AAGGTCAHSARAGGTCA
TGACCTYTSDTGACCTT
SELEX
Jolma et al.(2013)
Rarg_3
0.794
0.514
RARG
M05653_2.00
Homo sapiens
NRGGTCANV
BNTGACCYN
SELEX
Yin et al.(2017)
RARG_FL_HT-SELEX
0.794
0.514
RARG
M05649_2.00
Homo sapiens
DRGGTCAAAAGKTCAN
NTGAMCTTTTGACCYH
SELEX
Yin et al.(2017)
RARG_eDBD_HT-SELEX_1
0.794
0.514
RARG
M05650_2.00
Homo sapiens
RAGGTCATGACCTH
DAGGTCATGACCTY
SELEX
Yin et al.(2017)
RARG_eDBD_HT-SELEX_2
0.794
0.514
Rarg
M05885_2.00
Mus musculus
NRGGTCANDRGKKYA
TRMMCYHNTGACCYN
SMiLE-seq
Isakova et al.(2017)
RARg
0.794
0.514
RARG
M09289_2.00
Homo sapiens
RGGTCAVVVWGNMMNNDV
BHNNKKNCWBBBTGACCY
Misc
Kulakovskiy et al.(2013)
RARG_HUMAN.H11MO.0.B
0.794
0.514
Rarg
M09300_2.00
Mus musculus
RGGTCAVVVWGNMMNNDV
BHNNKKNCWBBBTGACCY
Misc
Kulakovskiy et al.(2013)
RARG_MOUSE.H11MO.0.C
0.794
0.514
Rarg
M09613_2.00
Mus musculus
RGKTCAAGGBCA
TGVCCTTGAMCY
Misc
Heinz et al.(2010)
ES-RARg_GSE30538
0.794
0.514
RARG
M11167_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RARG_Q3
0.794
0.514
RARG
M05654_2.00
Homo sapiens
NRGGTCRNV
BNYGACCYN
SELEX
Yin et al.(2017)
RARG_FL_Methyl-HT-SELEX
0.794
0.514
RARG
M05651_2.00
Homo sapiens
DRGGTCAARRGGTCRN
NYGACCYYTTGACCYH
SELEX
Yin et al.(2017)
RARG_eDBD_Methyl-HT-SELEX_1
0.794
0.514
RARG
M05652_2.00
Homo sapiens
DAGKTCRYGACCYY
RRGGTCRYGAMCTH
SELEX
Yin et al.(2017)
RARG_eDBD_Methyl-HT-SELEX_2
0.794
0.514
Q95WG3_ACRMI
M02424_2.00
Acropora millepora
NRAGGTCAN
NTGACCTYN
PBM
Weirauch et al.(2014)
pTH6144
0.787
0.514
AAEL009588
M02388_2.00
Aedes aegypti
NRGGTCR
YGACCYN
PBM
Weirauch et al.(2014)
pTH5508
0.766
0.500
Hr46
M02406_2.00
Drosophila melanogaster
NRGGTCAN
NTGACCYN
PBM
Weirauch et al.(2014)
pTH6142
0.766
0.500
Hr46
M03926_2.00
Drosophila melanogaster
RGGTCAGTRGGTCA
TGACCYACTGACCY
SELEX
Nitta et al.(2015)
Hr46_1
0.766
0.500
Hr46
M06412_2.00
Drosophila melanogaster
AWKTGGGTYW
WRACCCAMWT
B1H
Zhu et al.(2011)
Hr46_FlyReg_FBgn0000448
0.766
0.500
Hr46
M06413_2.00
Drosophila melanogaster
HWNBAGGTCA
TGACCTVNWD
B1H
Zhu et al.(2011)
Hr46_SANGER_5_FBgn0000448
0.766
0.500
Rorc
M09324_2.00
Mus musculus
NDAWSTRRGTCA
TGACYYASWTHN
Misc
Kulakovskiy et al.(2013)
RORG_MOUSE.H11MO.0.B
0.766
0.514
Rorc
M09617_2.00
Mus musculus
AWBTRGGTCA
TGACCYAVWT
Misc
Heinz et al.(2010)
EL4-RORgt.Flag_GSE56019
0.766
0.514
RORC
M02405_2.00
Tetraodon nigroviridis
NGAGGTCANN
NNTGACCTCN
PBM
Weirauch et al.(2014)
pTH6612
0.765
0.514
Rarb
M02401_2.00
Mus musculus
NRRGGTCAHN
NDTGACCYYN
PBM
Weirauch et al.(2014)
pTH2804
0.759
0.500
RARA
M03369_2.00
Homo sapiens
RRAGGTCAWBWRRGGTCA
TGACCYYWVWTGACCTYY
SELEX
Jolma et al.(2013)
RARA_1
0.759
0.500
RARA
M03370_2.00
Homo sapiens
RAGGTCAAAAGGTCAWKB
VMWTGACCTTTTGACCTY
SELEX
Jolma et al.(2013)
RARA_2
0.759
0.500
RARA
M03371_2.00
Homo sapiens
AGGTCAHNYWRAGGTCA
TGACCTYWRNDTGACCT
SELEX
Jolma et al.(2013)
RARA_3
0.759
0.500
RARA
M03372_2.00
Homo sapiens
ARGGTCAAAAGGTCA
TGACCTTTTGACCYT
SELEX
Jolma et al.(2013)
RARA_4
0.759
0.500
RARA
M03373_2.00
Homo sapiens
WRRGGTCAHSHRRGGTCA
TGACCYYDSDTGACCYYW
SELEX
Jolma et al.(2013)
RARA_5
0.759
0.500
RARA
M03374_2.00
Homo sapiens
AGGTCAWNNARAGGTCA
TGACCTYTNNWTGACCT
SELEX
Jolma et al.(2013)
RARA_6
0.759
0.500
RARB
M03355_2.00
Homo sapiens
AAAGGTCAARAGGTCA
TGACCTYTTGACCTTT
SELEX
Jolma et al.(2013)
RARB_1
0.759
0.500
Rarb
M03423_2.00
Mus musculus
WAAGGTCAAAAGGTCA
TGACCTTTTGACCTTW
SELEX
Jolma et al.(2013)
Rarb_1
0.759
0.500
Rarb
M03424_2.00
Mus musculus
RRAGGTCANBWRAGGTCA
TGACCTYWVNTGACCTYY
SELEX
Jolma et al.(2013)
Rarb_2
0.759
0.500
Rarb
M03425_2.00
Mus musculus
AGGTCAHVBWRAGGTCA
TGACCTYWVBDTGACCT
SELEX
Jolma et al.(2013)
Rarb_3
0.759
0.500
RARA
M05607_2.00
Homo sapiens
NVGGKCANNRGGKCAN
NTGMCCYNNTGMCCBN
SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_1
0.759
0.500
RARA
M05608_2.00
Homo sapiens
NVGGKCAYGNCCBN
NVGGNCRTGMCCBN
SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_2
0.759
0.500
RARA
M05609_2.00
Homo sapiens
NRRGGTCANV
BNTGACCYYN
SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_3
0.759
0.500
RARB
M05563_2.00
Homo sapiens
NHAAGGTCAN
NTGACCTTDN
SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_1
0.759
0.500
RARB
M05564_2.00
Homo sapiens
RRGGTCAARRGGTCAN
NTGACCYYTTGACCYY
SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_2
0.759
0.500
RARB
M05565_2.00
Homo sapiens
DAGGTCAYGACCYY
RRGGTCRTGACCTH
SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_3
0.759
0.500
RARA
M05878_2.00
Homo sapiens
RAGGTCA
TGACCTY
SMiLE-seq
Isakova et al.(2017)
RARa
0.759
0.500
RARA
M09277_2.00
Homo sapiens
RRRDVDBSNDRAGKTCARGG
CCYTGAMCTYHNSVHBHYYY
Misc
Kulakovskiy et al.(2013)
RARA_HUMAN.H11MO.0.A
0.759
0.500
RARA
M11137_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR1B1_Q6
0.759
0.500
RARB
M11094_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR1B2_Q6
0.759
0.500
RARA
M05610_2.00
Homo sapiens
DRGGKCRNDRGGTCRN
NYGACCYHNYGMCCYH
SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_1
0.759
0.500
RARA
M05611_2.00
Homo sapiens
NVGGTCAYGMCCYN
NRGGKCRTGACCBN
SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_2
0.759
0.500
RARA
M05612_2.00
Homo sapiens
NRAGGTCANN
NNTGACCTYN
SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_3
0.759
0.500
RARB
M05566_2.00
Homo sapiens
NHRAGGTCAH
DTGACCTYDN
SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_1
0.759
0.500
RARB
M05567_2.00
Homo sapiens
RRGGTCAHRRGGTCAN
NTGACCYYDTGACCYY
SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_2
0.759
0.500
RARB
M05568_2.00
Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_3
0.759
0.500
Rara
M00185_2.00
Mus musculus
NRGGTCAN
NTGACCYN
PBM
Badis et al.(2009)
Rara_1051
0.759
0.486
Rara
M03432_2.00
Mus musculus
AAAGGTCAHBVRAGGTCA
TGACCTYBVDTGACCTTT
SELEX
Jolma et al.(2013)
Rara_1
0.759
0.486
Rara
M03433_2.00
Mus musculus
AGGTCAHNHAAAGGTCA
TGACCTTTDNDTGACCT
SELEX
Jolma et al.(2013)
Rara_2
0.759
0.486
Rara
M03434_2.00
Mus musculus
RAGGTCAAAAGGTCA
TGACCTTTTGACCTY
SELEX
Jolma et al.(2013)
Rara_3
0.759
0.486
Rara
M09329_2.00
Mus musculus
RGRTCRDRAGKTCAAGGTCA
TGACCTTGAMCTYHYGAYCY
Misc
Kulakovskiy et al.(2013)
RARA_MOUSE.H11MO.0.A
0.759
0.486
Hr4
M06435_2.00
Drosophila melanogaster
AAGGTCA
TGACCTT
B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546
0.756
0.514
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE03966
Nuclear receptor
243
319
DLCAICGDSATGYHYGVISCEGCKGFFRRSVHRKVDYVCQKGAACQFSYENCAMNRGARTRCQACRFKRCVEMGMNK
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis remanei
TFs
825 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy