NR1I2 (Bos taurus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSBTAG00000019557 T302598_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.982 0.943
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.982 0.943
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.982 0.943
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.982 0.943
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.951 0.914
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.946 0.671
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.924 0.657
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.924 0.657
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.924 0.657
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.924 0.657
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.924 0.657
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.924 0.657
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.924 0.657
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.924 0.657
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.924 0.657
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.883 0.643
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR

YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.840 0.614
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH

DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.840 0.614
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.840 0.614
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN

NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.840 0.614
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.818 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000026059 Nuclear receptor 25 95

Links

Other Nuclear receptor family TFs
Other Bos taurus TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NR1I3 Homo sapiens ENSG00000143257 D 0.840
VDR Homo sapiens ENSG00000111424 D 0.924
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.883
NR1I2 Homo sapiens ENSG00000144852 D 0.982
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.951
Vdr Mus musculus ENSMUSG00000022479 D 0.924
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.946
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.818
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.946
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.860
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.915
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.946
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.908
VDR Tupaia belangeri ENSTBEG00000005717 I 0.924
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.927
vdra Takifugu rubripes ENSTRUG00000011907 I 0.946
WBGene00245913 Onchocerca volvulus WBGene00245913 I 0.755
tetur01g10970 Tetranychus urticae tetur01g10970 I 0.782
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.883
LOAG_16842 Loa loa LOAG_16842 I 0.755
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.946
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.854
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.946
ENSXMAG00000003990 Xiphophorus maculatus ENSXMAG00000003990 I 0.818
VDR Tursiops truncatus ENSTTRG00000012578 I 0.924
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.982
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.924
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.951
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.840
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.947
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.906
ENSPPYG00000013508 Pongo abelii ENSPPYG00000013508 I 0.750
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.924
ENSPMAG00000008742 Petromyzon marinus ENSPMAG00000008742 I 0.756
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.912
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.946
ENSPFOG00000007256 Poecilia formosa ENSPFOG00000007256 I 0.845
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.982
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.970
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.924
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.844
VDR Sus scrofa ENSSSCG00000020864 I 0.924
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.989
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.789
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.949
NR1I3 Sorex araneus ENSSARG00000002684 I 0.822
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.924
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I 0.818
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.951
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.946
Aan_R009572 Calypte anna Aan_R009572 I 0.927
TMUE_s0008014200 Trichuris muris TMUE_s0008014200 I 0.832
EEL_0000192101 Elaeophora elaphi EEL_0000192101 I 0.755
DME_0000391501 Dracunculus medinensis DME_0000391501 I 0.755
DICVIV_05958 Dictyocaulus viviparus DICVIV_05958 I 0.750
D918_02615 Trichuris suis D918_02615 I 0.832
D917_00700 Trichinella nativa D917_00700 I 0.832
BTMF_0001180601 Brugia timori BTMF_0001180601 I 0.755
ASU_11275 Ascaris suum ASU_11275 I 0.757
ANCCAN_11234 Ancylostoma caninum ANCCAN_11234 I 0.774
ACOC_0001278301 Angiostrongylus costaricensis ACOC_0001278301 I 0.778
GPUH_0000103801 Gongylonema pulchrum GPUH_0000103801 I 0.758
HCOI00433800 Haemonchus contortus HCOI00433800 I 0.773
HCOI00910600 Haemonchus contortus HCOI00910600 I 0.773
TELCIR_16351 Teladorsagia circumcincta TELCIR_16351 I 0.777
TCNE_0001577801 Toxocara canis TCNE_0001577801 I 0.757
TCLT_0000569201 Thelazia callipaeda TCLT_0000569201 I 0.757
OFLC_0000511401 Onchocerca flexuosa OFLC_0000511401 I 0.755
nOo.2.0.1.g07306 Onchocerca ochengi nOo.2.0.1.g07306 I 0.755
nLs.2.1.2.g05295 Litomosoides sigmodontis nLs.2.1.2.g05295 I 0.755
NECAME_11142 Necator americanus NECAME_11142 I 0.774
NBR_0001980401 Nippostrongylus brasiliensis NBR_0001980401 I 0.777
nAv.1.0.1.g02667 Acanthocheilonema viteae nAv.1.0.1.g02667 I 0.755
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.949
vdr.S Xenopus laevis XB-GENE-864847 I 0.935
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.982
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.989
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.924
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.924
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.947
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.902
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.905
Alligator_sinensis_CCG005392.1 Alligator sinensis Alligator_sinensis_CCG005392.1 I 0.856
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.834
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.927
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.983
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.924
vdr Xenopus tropicalis XB-GENE-486505 I 0.932
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.830
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.949
SNAPOd2T00001873001 Oikopleura dioica SNAPOd2T00001873001 I 0.822
SMU15000518 Schmidtea mediterranea SMU15000518 I 0.785
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.882
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.882
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.946
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.888
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.929
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.927
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.786
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.924
vdrb Danio rerio ENSDARG00000070721 I 0.946
nr1i2 Danio rerio ENSDARG00000029766 I 0.970
thraa Danio rerio ENSDARG00000000151 I 0.749
ENSCSAVG00000008466 Ciona savignyi ENSCSAVG00000008466 I 0.822
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.952
ENSCSAG00000007092 Chlorocebus sabaeus ENSCSAG00000007092 I 0.750
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.924
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.822
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.951
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.945
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.945
VDR Felis catus ENSFCAG00000024594 I 0.924
NR1I2 Felis catus ENSFCAG00000006092 I 0.978
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.982
THRA Echinops telfairi ENSETEG00000013166 I 0.749
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.924
VDR Equus caballus ENSECAG00000015822 I 0.924
NR1I2 Equus caballus ENSECAG00000008728 I 0.982
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.834
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.951
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.850
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.946
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.955
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.829
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.924
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.978
VDR Anolis carolinensis ENSACAG00000013485 I 0.946
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.889
EFV58098 Trichinella spiralis EFV58098 I 0.832
Bm2982 Brugia malayi Bm2982 I 0.755
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.946
VDR Bos taurus ENSBTAG00000016414 I 0.924
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.924
VDR Callithrix jacchus ENSCJAG00000015018 I 0.924
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.982
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.840
vdr-a Ciona intestinalis ENSCING00000020740 I 0.945
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.924
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.753
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.933
VDR Canis familiaris ENSCAFG00000009103 I 0.924
WUBG_00356 Wuchereria bancrofti WUBG_00356 I 0.755
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.758
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.969
VDR Otolemur garnettii ENSOGAG00000005480 I 0.924
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.924
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.750
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.931
ENSOARG00000019817 Ovis aries ENSOARG00000019817 I 0.833
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.924
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.924
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.840
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.826
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.946
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.960
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.834
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.924
ENSPANG00000004760 Papio anubis ENSPANG00000004760 I 0.750
nr1i2 Oryzias latipes ENSORLG00000017953 I 0.815
vdr Oryzias latipes ENSORLG00000016402 I 0.946
vdralpha Oryzias latipes ENSORLG00000001063 I 0.946
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.962
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.945
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.982
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.924
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.924
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.954
VDR Loxodonta africana ENSLAFG00000006418 I 0.924
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.758
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.944
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.962
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.946
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.946
VDR Gorilla gorilla ENSGGOG00000016473 I 0.924
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.982
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.945
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.939
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.834
VDR Macaca mulatta ENSMMUG00000006727 I 0.924
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.982
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.983
VDR Myotis lucifugus ENSMLUG00000000912 I 0.924
VDR Microcebus murinus ENSMICG00000009017 I 0.924
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.927
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.924
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.793
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.838