NR1I3 (Callithrix jacchus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSCJAG00000004783 T302710_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR

YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.993 0.986
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH

DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.993 0.986
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.993 0.986
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN

NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.993 0.986
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.987 0.900
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.830 0.643
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.819 0.629
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.819 0.629
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.819 0.629
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.819 0.629
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.819 0.629
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.819 0.629
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.819 0.629
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.819 0.629
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.819 0.629
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.765 0.657
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.759 0.586
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.759 0.586
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.759 0.586
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.759 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000008876 Nuclear receptor 9 78
ENSCJAP00000008915 Nuclear receptor 5 49
ENSCJAP00000008962 Nuclear receptor 9 78
ENSCJAP00000008972 Nuclear receptor 9 78
ENSCJAP00000044762 Nuclear receptor 9 78

Links

Other Nuclear receptor family TFs
Other Callithrix jacchus TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R009572 Calypte anna Aan_R009572 I 0.822
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.808
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.890
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.843
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.808
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.799
VDR Anolis carolinensis ENSACAG00000013485 I 0.822
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.759
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.819
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.939
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.830
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.832
NR1I3 Bos taurus ENSBTAG00000009215 I 0.964
VDR Bos taurus ENSBTAG00000016414 I 0.819
NR1I2 Bos taurus ENSBTAG00000019557 I 0.840
VDR Canis familiaris ENSCAFG00000009103 I 0.819
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.812
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.974
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.819
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.759
VDR Callithrix jacchus ENSCJAG00000015018 I 0.819
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.819
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.955
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.992
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.819
nr1i2 Danio rerio ENSDARG00000029766 I 0.755
vdrb Danio rerio ENSDARG00000070721 I 0.832
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.819
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.968
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.982
NR1I2 Equus caballus ENSECAG00000008728 I 0.759
VDR Equus caballus ENSECAG00000015822 I 0.819
NR1I3 Equus caballus ENSECAG00000020930 I 0.970
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.965
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.819
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.759
NR1I3 Felis catus ENSFCAG00000000497 I 0.964
NR1I2 Felis catus ENSFCAG00000006092 I 0.759
VDR Felis catus ENSFCAG00000024594 I 0.819
VDR Homo sapiens ENSG00000111424 D 0.819
NR1I3 Homo sapiens ENSG00000143257 D 0.993
NR1I2 Homo sapiens ENSG00000144852 D 0.759
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.832
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.832
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.822
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.765
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.991
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.759
VDR Gorilla gorilla ENSGGOG00000016473 I 0.819
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.830
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.832
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.796
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.822
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.976
VDR Loxodonta africana ENSLAFG00000006418 I 0.819
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.827
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.768
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.966
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.819
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.822
VDR Microcebus murinus ENSMICG00000009017 I 0.819
VDR Myotis lucifugus ENSMLUG00000000912 I 0.819
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.776
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.759
VDR Macaca mulatta ENSMMUG00000006727 I 0.819
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.992
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.819
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.964
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.819
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.819
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.970
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.987
Vdr Mus musculus ENSMUSG00000022479 D 0.819
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.759
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.993
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.819
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.972
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.819
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.971
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.819
VDR Otolemur garnettii ENSOGAG00000005480 I 0.819
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.858
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.984
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.832
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.827
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.962
vdralpha Oryzias latipes ENSORLG00000001063 I 0.832
vdr Oryzias latipes ENSORLG00000016402 I 0.832
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.819
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.759
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.840
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.992
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.964
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.819
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.992
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.976
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.832
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.832
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.830
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.798
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.819
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.844
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.808
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.993
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.759
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.750
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.965
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.819
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I 0.987
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.819
NR1I3 Sorex araneus ENSSARG00000002684 I 0.955
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.795
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.968
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.964
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.840
VDR Sus scrofa ENSSSCG00000020864 I 0.819
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.949
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.819
VDR Tupaia belangeri ENSTBEG00000005717 I 0.819
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.822
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.748
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.832
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.832
vdra Takifugu rubripes ENSTRUG00000011907 I 0.832
ENSTSYG00000003712 Tarsius syrichta ENSTSYG00000003712 I 0.949
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.759
NR1I3 Tursiops truncatus ENSTTRG00000009227 I 0.851
VDR Tursiops truncatus ENSTTRG00000012578 I 0.819
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.832
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.832
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.822
HelroG108893 Helobdella robusta HelroG108893 I 0.821
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.776
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.819
NEMVEDRAFT_v1g165424 Nematostella vectensis NEMVEDRAFT_v1g165424 I 0.780
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.862
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.822
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.827
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.827
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.765
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.855
vdr Xenopus tropicalis XB-GENE-486505 I 0.790
vdr.S Xenopus laevis XB-GENE-864847 I 0.790
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.846