VDR (Callithrix jacchus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSCJAG00000015018 T302724_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.991 1.000
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.991 1.000
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.991 1.000
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.991 1.000
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.991 1.000
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.991 1.000
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.991 1.000
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.991 1.000
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.991 1.000
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.985 0.857
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.935 0.657
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.935 0.657
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.935 0.657
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.935 0.657
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.932 0.643
EcR
M06414_2.00
Drosophila melanogaster
RAGGTCAW

WTGACCTY
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
0.852 0.543
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.842 0.600
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.839 0.629
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR

YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.822 0.629
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH

DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.822 0.629
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.822 0.629
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN

NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.822 0.629
NR1H4
M00368_2.00
Homo sapiens
NVRGGTCANN

NNTGACCYBN
PBM
Barrera et al.(2016)
NR1H4_REF
0.799 0.529
NR1H4
M05876_2.00
Homo sapiens
DRGKTCAHHKD

HMDDTGAMCYH
SMiLE-seq
Isakova et al.(2017)
NR1H4
0.799 0.529
NR1H4
M08152_2.00
Homo sapiens
NNGGTCATTNN

NNAATGACCNN
ChIP-seq
Mathelier et al.(2014)
MA1110.1
0.799 0.529
NR1H4
M09263_2.00
Homo sapiens
CCBVNVGGYCRBTGMCCYB

VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_HUMAN.H11MO.0.B
0.799 0.529
Nr1h4
M09332_2.00
Mus musculus
CCBVNVGGYCRBTGMCCYB

VRGGKCAVYGRCCBNBVGG
Misc
Kulakovskiy et al.(2013)
NR1H4_MOUSE.H11MO.0.A
0.799 0.529
Nr1h4
M09618_2.00
Mus musculus
NRGGBCANTGVCCY

RGGBCANTGVCCYN
Misc
Heinz et al.(2010)
Liver-FXR_Chong_et_al.
0.799 0.529
NR1H4
M11086_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q2
0.799 0.529
NR1H4
M11087_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q3
0.799 0.529
NR1H4
M11088_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXR_Q5
0.799 0.529
NR1H4
M11089_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRRXR_Q5
0.799 0.529
NR1H4
M00367_2.00
Homo sapiens
NNNTWTTATDHNN

NNDHATAAWANNN
PBM
Barrera et al.(2016)
NR1H4_C144R
0.799 0.514
nr1h5.S
M11194_2.00
Xenopus laevis Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
0.761 0.529
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000027694 Nuclear receptor 22 91
ENSCJAP00000051290 Nuclear receptor 4 59

Links

Other Nuclear receptor family TFs
Other Callithrix jacchus TFs

Invalid Input OrderBy

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action