CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nr1i2
(
Danio rerio
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSDARG00000029766
T302871_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables nuclear receptor activity and steroid hormone receptor activity. Acts upstream of or within regulation of transcription, DNA-templated; response to toxic substance; and transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including adenohypophyseal placode; brain; heart; liver; and pleuroperitoneal region. Orthologous to human NR1I2 (nuclear receptor subfamily 1 group I member 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.978
0.729
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.978
0.729
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.978
0.729
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.978
0.729
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN
NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.943
0.700
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.940
0.700
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.920
0.671
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.920
0.671
VDR
M05877_2.00
Homo sapiens
HRRGTTCA
TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.920
0.671
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.920
0.671
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.920
0.671
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.920
0.671
VDR
M11116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.920
0.671
VDR
M11117_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.920
0.671
VDR
M11118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.920
0.671
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH
DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.880
0.614
THRB
M03379_2.00
Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_1
0.756
0.514
THRB
M03380_2.00
Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH
SELEX
Jolma et al.(2013)
THRB_2
0.756
0.514
THRB
M03381_2.00
Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN
SELEX
Jolma et al.(2013)
THRB_3
0.756
0.514
THRB
M05629_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1
0.756
0.514
THRB
M05630_2.00
Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2
0.756
0.514
THRB
M05633_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1
0.756
0.514
THRB
M05634_2.00
Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2
0.756
0.514
THRB
M09285_2.00
Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB
Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C
0.756
0.514
THRB
M11150_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01
0.756
0.514
THRB
M05631_2.00
Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1
0.756
0.514
THRB
M05632_2.00
Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2
0.756
0.514
THRB
M05635_2.00
Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1
0.756
0.514
THRB
M05636_2.00
Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2
0.756
0.514
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.755
0.571
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH
DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.755
0.571
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.755
0.571
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN
NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.755
0.571
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000022718
Nuclear receptor
44
113
KICQVCGDKSTGYHFNAMTCEGCKGFFRRAMKRPAQLCCPFQSACVITKSNRRQCQSCRLQKCLSIGMKR
ENSDARP00000061524
Nuclear receptor
44
113
KICQVCGDKSTGYHFNAMTCEGCKGFFRRAMKRPAQLCCPFQSACVITKSNRRQCQSCRLQKCLSIGMKR
ENSDARP00000106185
Nuclear receptor
44
113
KICQVCGDKSTGYHFNAMTCEGCKGFFRRAMKRPAQLCCPFQSACVITKSNRRQCQSCRLQKCLSIGMKR
ENSDARP00000107140
Nuclear receptor
44
113
KICQVCGDKSTGYHFNAMTCEGCKGFFRRAMKRPAQLCCPFQSACVITKSNRRQCQSCRLQKCLSIGMKR
Links
Other
Nuclear receptor
family TFs
Other
Danio rerio
TFs
263 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy