NR1I2 (Equus caballus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSECAG00000008728 T303007_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.988 1.000
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.988 1.000
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.988 1.000
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.988 1.000
Nr1i2
M09316_2.00
Mus musculus
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C
0.968 0.971
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.953 0.671
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.935 0.657
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.935 0.657
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.935 0.657
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.935 0.657
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.935 0.657
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.935 0.657
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.935 0.657
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.935 0.657
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.935 0.657
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.890 0.629
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR

YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.759 0.586
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH

DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.759 0.586
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.759 0.586
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN

NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.759 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000007024 Nuclear receptor 39 109

Links

Other Nuclear receptor family TFs
Other Equus caballus TFs

200 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g02667 Acanthocheilonema viteae nAv.1.0.1.g02667 I 0.752
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.873
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.935
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.986
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.910
Alligator_sinensis_CCG005392.1 Alligator sinensis Alligator_sinensis_CCG005392.1 I 0.874
ANCCAN_11234 Ancylostoma caninum ANCCAN_11234 I 0.768
ACOC_0001278301 Angiostrongylus costaricensis ACOC_0001278301 I 0.772
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.892
VDR Anolis carolinensis ENSACAG00000013485 I 0.953
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.938
ASU_11275 Ascaris suum ASU_11275 I 0.750
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.953
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.953
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.962
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.935
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.983
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.806
NR1I3 Bos taurus ENSBTAG00000009215 I 0.806
VDR Bos taurus ENSBTAG00000016414 I 0.935
NR1I2 Bos taurus ENSBTAG00000019557 I 0.982
estExt_fgenesh2_pg.C_120005 Branchiostoma floridae estExt_fgenesh2_pg.C_120005 I 0.751
estExt_gwp.C_2760053 Branchiostoma floridae estExt_gwp.C_2760053 I 0.751
Bm2982 Brugia malayi Bm2982 I 0.752
BTMF_0001180601 Brugia timori BTMF_0001180601 I 0.752
VDR Callithrix jacchus ENSCJAG00000015018 I 0.935
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.988
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.759
Aan_R009572 Calypte anna Aan_R009572 I 0.936
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.787
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.957
VDR Canis familiaris ENSCAFG00000009103 I 0.935
CapteG222512 Capitella teleta CapteG222512 I 0.747
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.836
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.935
NR1I2 Cavia porcellus ENSCPOG00000020161 I 0.968
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.954
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.908
ENSCSAG00000007092 Chlorocebus sabaeus ENSCSAG00000007092 I 0.826
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.935
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.751
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.935
vdr-a Ciona intestinalis ENSCING00000020740 I 0.958
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.962
ENSCSAVG00000008466 Ciona savignyi ENSCSAVG00000008466 I 0.858
nr1i2 Danio rerio ENSDARG00000029766 I 0.978
vdrb Danio rerio ENSDARG00000070721 I 0.953
thraa Danio rerio ENSDARG00000000151 I 0.764
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.817
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.935
Nr1i2 Dipodomys ordii ENSDORG00000003966 I 0.968
DME_0000391501 Dracunculus medinensis DME_0000391501 I 0.752
THRA Echinops telfairi ENSETEG00000013166 I 0.764
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.988
EEL_0000192101 Elaeophora elaphi EEL_0000192101 I 0.752
VDR Equus caballus ENSECAG00000015822 I 0.935
NR1I3 Equus caballus ENSECAG00000020930 I 0.807
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.793
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.935
VDR Felis catus ENSFCAG00000024594 I 0.935
NR1I3 Felis catus ENSFCAG00000000497 I 0.796
NR1I2 Felis catus ENSFCAG00000006092 I 0.986
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.953
ENSGMOG00000016130 Gadus morhua ENSGMOG00000016130 I 0.746
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.953
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.890
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.890
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.936
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.953
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.953
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.936
GPUH_0000103801 Gongylonema pulchrum GPUH_0000103801 I 0.752
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.755
VDR Gorilla gorilla ENSGGOG00000016473 I 0.935
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.988
HCOI00433800 Haemonchus contortus HCOI00433800 I 0.770
HCOI00910600 Haemonchus contortus HCOI00910600 I 0.770
VDR Homo sapiens ENSG00000111424 D 0.935
NR1I3 Homo sapiens ENSG00000143257 D 0.759
NR1I2 Homo sapiens ENSG00000144852 D 0.988
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.868
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.935
ENSSTOG00000014988 Ictidomys tridecemlineatus ENSSTOG00000014988 I 0.968
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.967
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.951
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.953
nLs.2.1.2.g05295 Litomosoides sigmodontis nLs.2.1.2.g05295 I 0.752
LOAG_16842 Loa loa LOAG_16842 I 0.752
LotgiG138244 Lottia gigantea LotgiG138244 I 0.748
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.791
NR1I2 Loxodonta africana ENSLAFG00000007829 I 0.961
VDR Loxodonta africana ENSLAFG00000006418 I 0.935
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.751
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.935
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.988
VDR Macaca mulatta ENSMMUG00000006727 I 0.935
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.988
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.751
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.935
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.822
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.961
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.936
VDR Microcebus murinus ENSMICG00000009017 I 0.935
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.809
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.935
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.935
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.806
Vdr Mus musculus ENSMUSG00000022479 D 0.935
Nr1i2 Mus musculus ENSMUSG00000022809 D 0.968
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.987
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.935
VDR Myotis lucifugus ENSMLUG00000000912 I 0.935
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.987
NECAME_11142 Necator americanus NECAME_11142 I 0.768
NBR_0001980401 Nippostrongylus brasiliensis NBR_0001980401 I 0.771
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.935
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.988
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.759
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.775
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.970
SNAPOd2T00001873001 Oikopleura dioica SNAPOd2T00001873001 I 0.860
OFLC_0000511401 Onchocerca flexuosa OFLC_0000511401 I 0.752
nOo.2.0.1.g07306 Onchocerca ochengi nOo.2.0.1.g07306 I 0.752
WBGene00245913 Onchocerca volvulus WBGene00245913 I 0.752
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.888
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.953
ENSONIG00000014385 Oreochromis niloticus ENSONIG00000014385 I 0.780
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.953
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.784
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.955
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.935
vdr Oryzias latipes ENSORLG00000016402 I 0.953
nr1i2 Oryzias latipes ENSORLG00000017953 I 0.837
vdralpha Oryzias latipes ENSORLG00000001063 I 0.953
VDR Otolemur garnettii ENSOGAG00000005480 I 0.935
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.981
ENSOARG00000019817 Ovis aries ENSOARG00000019817 I 0.764
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.935
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.761
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.988
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.759
ENSPANG00000004760 Papio anubis ENSPANG00000004760 I 0.826
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.751
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.935
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.911
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.954
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.953
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.923
ENSPMAG00000008742 Petromyzon marinus ENSPMAG00000008742 I 0.776
ENSPFOG00000007256 Poecilia formosa ENSPFOG00000007256 I 0.859
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.953
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.953
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.953
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.900
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.900
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.935
ENSPPYG00000014063 Pongo abelii ENSPPYG00000014063 I 0.756
ENSPPYG00000013508 Pongo abelii ENSPPYG00000013508 I 0.826
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.791
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.966
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.981
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.806
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.935
Nr1i2 Rattus norvegicus ENSRNOG00000002906 I 0.968
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.935
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.967
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.819
SMU15000518 Schmidtea mediterranea SMU15000518 I 0.814
NR1I3 Sorex araneus ENSSARG00000002684 I 0.858
VDR Sus scrofa ENSSSCG00000020864 I 0.935
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.983
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.806
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.936
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.953
vdra Takifugu rubripes ENSTRUG00000011907 I 0.953
nr1i2 Takifugu rubripes ENSTRUG00000003245 I 0.880
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.988
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.873
TELCIR_16351 Teladorsagia circumcincta TELCIR_16351 I 0.771
tetur01g10970 Tetranychus urticae tetur01g10970 I 0.799
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.922
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.953
nr1i2 Tetraodon nigroviridis ENSTNIG00000013932 I 0.923
TCLT_0000569201 Thelazia callipaeda TCLT_0000569201 I 0.750
TCNE_0001577801 Toxocara canis TCNE_0001577801 I 0.750
D917_00700 Trichinella nativa D917_00700 I 0.830
EFV58098 Trichinella spiralis EFV58098 I 0.830
TMUE_s0008014200 Trichuris muris TMUE_s0008014200 I 0.830
D918_02615 Trichuris suis D918_02615 I 0.830
VDR Tupaia belangeri ENSTBEG00000005717 I 0.935
VDR Tursiops truncatus ENSTTRG00000012578 I 0.935
WUBG_00356 Wuchereria bancrofti WUBG_00356 I 0.752
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.960
vdr.S Xenopus laevis XB-GENE-864847 I 0.943
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.960
vdr Xenopus tropicalis XB-GENE-486505 I 0.941
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.840
ENSXMAG00000003990 Xiphophorus maculatus ENSXMAG00000003990 I 0.835
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.953
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.953