NR1I3 (Erinaceus europaeus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSEEUG00000004981 T303053_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nr1i3
M09302_2.00
Mus musculus
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C
0.983 0.843
NR1I3
M03924_2.00
Homo sapiens
RGKDYRNNNNRGKKYR

YRMMCYNNNNYRHMCY
SELEX
Nitta et al.(2015)
NR1I3_1
0.965 0.829
NR1I3
M05619_2.00
Homo sapiens
WDAGTTCAH

DTGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX
0.965 0.829
NR1I3
M09281_2.00
Homo sapiens
DRGGTCANNNRAGTTYAN

NTRAACTYNNNTGACCYH
Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C
0.965 0.829
NR1I3
M05620_2.00
Homo sapiens
WDAGTTCRN

NYGAACTHW
SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX
0.965 0.829
ENSGALG00000028624
M02398_2.00
Gallus gallus
GRGKTCAH

DTGAMCYC
PBM
Weirauch et al.(2014)
pTH6492
0.875 0.643
VDR
M03363_2.00
Homo sapiens
GRGTTCAYHGRGTTCA

TGAACYCDRTGAACYC
SELEX
Jolma et al.(2013)
VDR_1
0.866 0.600
Vdr
M03429_2.00
Mus musculus
RRGTTCAYHGRGTTCA

TGAACYCDRTGAACYY
SELEX
Jolma et al.(2013)
Vdr_1
0.866 0.600
VDR
M05877_2.00
Homo sapiens
HRRGTTCA

TGAACYYD
SMiLE-seq
Isakova et al.(2017)
VDR
0.866 0.600
VDR
M09269_2.00
Homo sapiens
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A
0.866 0.600
Vdr
M09315_2.00
Mus musculus
NRGGKCANNGRGKKCR

YGMMCYCNNTGMCCYN
Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A
0.866 0.600
VDR
M09606_2.00
Homo sapiens
NRRGGTCANNRRGKKCANNN

NNNTGMMCYYNNTGACCYYN
Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484
0.866 0.600
VDR
M11116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q3
0.866 0.600
VDR
M11117_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6_01
0.866 0.600
VDR
M11118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VDR_Q6
0.866 0.600
ENSPMAG00000000180
M02403_2.00
Petromyzon marinus
RGKWCRN

NYGWMCY
PBM
Weirauch et al.(2014)
pTH5509
0.829 0.600
NR1I2
M03925_2.00
Homo sapiens
RGKKCRNNVRGKKCR

YGMMCYBNNYGMMCY
SELEX
Nitta et al.(2015)
NR1I2_1
0.793 0.614
NR1I2
M05625_2.00
Homo sapiens
VRGTTCRNNSRGKTCRH

DYGAMCYSNNYGAACYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX
0.793 0.614
NR1I2
M09283_2.00
Homo sapiens
DDRRBTYMDNNRAGKTCAN

NTGAMCTYNNHKRAVYYHH
Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C
0.793 0.614
NR1I2
M05626_2.00
Homo sapiens
VRGKKCRNNVRGKKCRN

NYGMMCYBNNYGMMCYB
SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX
0.793 0.614
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000004546 Nuclear receptor 10 79

Links

Other Nuclear receptor family TFs
Other Erinaceus europaeus TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.875
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.829
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.983
Vdr Mus musculus ENSMUSG00000022479 D 0.866
VDR Homo sapiens ENSG00000111424 D 0.866
NR1I3 Homo sapiens ENSG00000143257 D 0.965
NR1I2 Homo sapiens ENSG00000144852 D 0.793
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.866
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I 0.983
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.866
NR1I3 Sorex araneus ENSSARG00000002684 I 0.980
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.857
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.986
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.747
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.989
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.866
VDR Tupaia belangeri ENSTBEG00000005717 I 0.866
VDR Sus scrofa ENSSSCG00000020864 I 0.866
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.973
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.866
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.986
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.771
NR6A1 Pan troglodytes ENSPTRG00000021357 I 0.762
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.832
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.829
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.982
vdralpha Oryzias latipes ENSORLG00000001063 I 0.832
vdr Oryzias latipes ENSORLG00000016402 I 0.832
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.866
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.967
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.986
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.832
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.832
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.845
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.866
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.907
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.811
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.965
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.793
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.982
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.832
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.832
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.866
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.793
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.989
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.967
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.866
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.777
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.866
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.932
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.824
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.928
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.928
Ocbimv22026489m.g Octopus bimaculoides Ocbimv22026489m.g I 0.806
SNAPOd2T00021181001 Oikopleura dioica SNAPOd2T00021181001 I 0.760
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.894
vdr Xenopus tropicalis XB-GENE-486505 I 0.796
vdr.S Xenopus laevis XB-GENE-864847 I 0.793
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.866
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.811
vdra Takifugu rubripes ENSTRUG00000011907 I 0.832
ENSTSYG00000003712 Tarsius syrichta ENSTSYG00000003712 I 0.948
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.777
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.793
NR1I3 Tursiops truncatus ENSTTRG00000009227 I 0.888
VDR Tursiops truncatus ENSTTRG00000012578 I 0.866
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.832
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.832
HelroG108893 Helobdella robusta HelroG108893 I 0.830
NEMVEDRAFT_v1g165424 Nematostella vectensis NEMVEDRAFT_v1g165424 I 0.812
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.875
SPU_004526 Strongylocentrotus purpuratus SPU_004526 I 0.761
Aan_R009572 Calypte anna Aan_R009572 I 0.866
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.855
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.865
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.906
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.892
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.889
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.866
nr1i2 Danio rerio ENSDARG00000029766 I 0.786
vdrb Danio rerio ENSDARG00000070721 I 0.832
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.866
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.983
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.984
NR1I2 Equus caballus ENSECAG00000008728 I 0.793
VDR Equus caballus ENSECAG00000015822 I 0.866
NR1I3 Equus caballus ENSECAG00000020930 I 0.987
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.866
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.793
NR1I3 Felis catus ENSFCAG00000000497 I 0.990
NR1I2 Felis catus ENSFCAG00000006092 I 0.793
VDR Felis catus ENSFCAG00000024594 I 0.866
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.839
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.967
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.966
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.866
VDR Anolis carolinensis ENSACAG00000013485 I 0.824
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.793
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.866
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.978
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.830
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.832
NR1I3 Bos taurus ENSBTAG00000009215 I 0.989
VDR Bos taurus ENSBTAG00000016414 I 0.866
VDR Canis familiaris ENSCAFG00000009103 I 0.866
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.879
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.988
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.866
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.965
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.793
VDR Callithrix jacchus ENSCJAG00000015018 I 0.866
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.839
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.866
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.965
VDR Macaca mulatta ENSMMUG00000006727 I 0.866
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.967
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.985
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.866
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.866
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.987
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.793
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.965
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.866
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.980
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.866
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.758
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.985
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.866
VDR Otolemur garnettii ENSOGAG00000005480 I 0.866
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.793
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.777
VDR Myotis lucifugus ENSMLUG00000000912 I 0.866
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.793
VDR Gorilla gorilla ENSGGOG00000016473 I 0.866
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.830
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.832
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.759
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.827
NR1I3 Loxodonta africana ENSLAFG00000001180 I 0.986
VDR Loxodonta africana ENSLAFG00000006418 I 0.866
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.829
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.866
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.983
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.866
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.866
NR5A1 Meleagris gallopavo ENSMGAG00000008342 I 0.760
VDR Microcebus murinus ENSMICG00000009017 I 0.866
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.881