NR1I3 (Homo sapiens)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSG00000143257 T303230_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR1I3
M03924_2.00		 Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1		 (Direct) (Direct)
NR1I3
M05619_2.00		 Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX		 (Direct) (Direct)
NR1I3
M05620_2.00		 Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX		 (Direct) (Direct)
NR1I3
M09281_2.00		 Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr1i3
M09302_2.00 		Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C 		0.985 0.886
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.833 0.643
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.822 0.629
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.822 0.629
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.822 0.629
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.822 0.629
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.822 0.629
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.822 0.629
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.822 0.629
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.822 0.629
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.822 0.629
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.759 0.586
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.759 0.586
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.759 0.586
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.759 0.586
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.749 0.643
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000356958 Nuclear receptor 9 78
ENSP00000356959 Nuclear receptor 9 78
ENSP00000356960 Nuclear receptor 5 49
ENSP00000356961 Nuclear receptor 9 78
ENSP00000356962 Nuclear receptor 9 78
ENSP00000356963 Nuclear receptor 9 78
ENSP00000356965 Nuclear receptor 9 78
ENSP00000399361 Nuclear receptor 5 49
ENSP00000406493 Nuclear receptor 9 78
ENSP00000407446 Nuclear receptor 5 49
ENSP00000412672 Nuclear receptor 9 78
ENSP00000421374 Nuclear receptor 9 78
ENSP00000422982 Nuclear receptor 5 49
ENSP00000423007 Nuclear receptor 5 49
ENSP00000423089 Nuclear receptor 5 49
ENSP00000423666 Nuclear receptor 5 49
ENSP00000424345 Nuclear receptor 5 49
ENSP00000424834 Nuclear receptor 5 49
ENSP00000424934 Nuclear receptor 9 78
ENSP00000425417 Nuclear receptor 5 49
ENSP00000425607 Nuclear receptor 5 49
ENSP00000425900 Nuclear receptor 5 49
ENSP00000426016 Nuclear receptor 9 78
ENSP00000426292 Nuclear receptor 9 78
ENSP00000427034 Nuclear receptor 9 78
ENSP00000427175 Nuclear receptor 5 49
ENSP00000427600 Nuclear receptor 5 49
ENSP00000487337 Nuclear receptor 9 78

Links

Other Nuclear receptor family TFs
Other Homo sapiens TFs

Invalid Input OrderBy

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action