ENSGMOG00000002967 (Gadus morhua)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSGMOG00000002967 T303418_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hnf4
M03935_2.00
Drosophila melanogaster
RGGKCAAAGGTCA

TGACCTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_1
0.983 0.814
Hnf4
M03936_2.00
Drosophila melanogaster
RGGKCAAAGTYCA

TGRACTTTGMCCY
SELEX
Nitta et al.(2015)
Hnf4_2
0.983 0.814
Hnf4
M03937_2.00
Drosophila melanogaster
RGTVCAAAGKTCR

YGAMCTTTGBACY
SELEX
Nitta et al.(2015)
Hnf4_3
0.983 0.814
Hnf4
M03938_2.00
Drosophila melanogaster
RTGRACTTTGGACY

RGTCCAAAGTYCAY
SELEX
Nitta et al.(2015)
Hnf4_4
0.983 0.814
Hnf4
M06428_2.00
Drosophila melanogaster
DKNKWSSNGGGGTCA

TGACCCCNSSWMNMH
B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914
0.983 0.814
Hnf4
M06429_2.00
Drosophila melanogaster
GGGGTCAH

DTGACCCC
B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914
0.983 0.814
HNF4G
M08155_2.00
Homo sapiens
NVRGDNCAAAGKYCA

TGRMCTTTGNHCYBN
ChIP-seq
Mathelier et al.(2014)
MA0484.1
0.983 0.857
HNF4G
M09287_2.00
Homo sapiens
VRGDNCAAAGKYCA

TGRMCTTTGNHCYB
Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B
0.983 0.857
Hnf4g
M09307_2.00
Mus musculus
VRGDNCAAAGKYCA

TGRMCTTTGNHCYB
Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C
0.983 0.857
HNF4G
M11155_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4G_01
0.983 0.857
HNF4G
M11156_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4G_02
0.983 0.857
Hnf4a
M00182_2.00
Mus musculus
NNRGKYMRNN

NNYKRMCYNN
PBM
Badis et al.(2009)
Hnf4a_2640
0.981 0.843
HNF4A
M03357_2.00
Homo sapiens
RWTGRACTTTGSACYB

VRGTSCAAAGTYCAWY
SELEX
Jolma et al.(2013)
HNF4A_1
0.981 0.843
HNF4A
M03358_2.00
Homo sapiens
RRGGKCAAAGTCCRBN

NVYGGACTTTGMCCYY
SELEX
Jolma et al.(2013)
HNF4A_2
0.981 0.843
HNF4A
M03359_2.00
Homo sapiens
NDTGGACTTTGDACYB

VRGTHCAAAGTCCAHN
SELEX
Jolma et al.(2013)
HNF4A_3
0.981 0.843
HNF4A
M03360_2.00
Homo sapiens
RRGGTCAAAGKTCA

TGAMCTTTGACCYY
SELEX
Jolma et al.(2013)
HNF4A_4
0.981 0.843
HNF4A
M03361_2.00
Homo sapiens
VRGGTCAAAGTCCANN

NNTGGACTTTGACCYB
SELEX
Jolma et al.(2013)
HNF4A_5
0.981 0.843
HNF4A
M03362_2.00
Homo sapiens
RRGTYCAAAGKTCAH

DTGAMCTTTGRACYY
SELEX
Jolma et al.(2013)
HNF4A_6
0.981 0.843
Hnf4a
M03426_2.00
Mus musculus
RRGGTCAAAGTCCANN

NNTGGACTTTGACCYY
SELEX
Jolma et al.(2013)
Hnf4a_1
0.981 0.843
HNF4A
M05573_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1
0.981 0.843
HNF4A
M05574_2.00
Homo sapiens
RRGGTCAAAGTCCAH

DTGGACTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2
0.981 0.843
HNF4A
M05575_2.00
Homo sapiens
RRGTCCAAAGGTCRN

NYGACCTTTGGACYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3
0.981 0.843
HNF4A
M05576_2.00
Homo sapiens
DTGGACTTTGGACYY

RRGTCCAAAGTCCAH
SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4
0.981 0.843
HNF4A
M08219_2.00
Homo sapiens
VRGDBCAAAGKYCAN

NTGRMCTTTGVHCYB
ChIP-seq
Contrino et al.(2012)
Mv81
0.981 0.843
HNF4A
M08220_2.00
Homo sapiens
AGTCCA

TGGACT
ChIP-seq
Contrino et al.(2012)
Mv82
0.981 0.843
HNF4A
M09268_2.00
Homo sapiens
VRGKNCAAAGTYCA

TGRACTTTGNMCYB
Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A
0.981 0.843
Hnf4a
M09308_2.00
Mus musculus
NRGKBCAAAGTYCA

TGRACTTTGVMCYN
Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A
0.981 0.843
HNF4A
M09605_2.00
Homo sapiens
NNVRGDNCAAAGKYCA

TGRMCTTTGNHCYBNN
Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021
0.981 0.843
HNF4A
M11105_2.00
Homo sapiens
VRGGNCAAAGKYCRB

VYGRMCTTTGNCCYB
Transfac
Matys et al.(2006)
V$HNF4_01_B
0.981 0.843
HNF4A
M11106_2.00
Homo sapiens
NNNRGDBYAAAGKBCANND

HNNTGVMCTTTRVHCYNNN
Transfac
Matys et al.(2006)
V$HNF4_01
0.981 0.843
HNF4A
M11107_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_09
0.981 0.843
HNF4A
M11108_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_10
0.981 0.843
HNF4A
M11109_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6
0.981 0.843
HNF4A
M11110_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_Q3
0.981 0.843
HNF4A
M11111_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4A_Q6_01
0.981 0.843
HNF4A
M11112_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_01
0.981 0.843
HNF4A
M11113_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_02
0.981 0.843
HNF4A
M11114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_03
0.981 0.843
HNF4A
M11115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF4_Q6_04
0.981 0.843
HNF4A
M05577_2.00
Homo sapiens
RRGGTCAAAGGTCRN

NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1
0.981 0.843
HNF4A
M05578_2.00
Homo sapiens
RRGGTCAAAGTCCRN

NYGGACTTTGACCYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2
0.981 0.843
HNF4A
M05579_2.00
Homo sapiens
RRGTCCAAAGGTCRN

NYGACCTTTGGACYY
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3
0.981 0.843
HNF4A
M05580_2.00
Homo sapiens
DTGGACTTTGGACYY

RRGTCCAAAGTCCAH
SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4
0.981 0.843
tll
M02408_2.00
Drosophila melanogaster
NRASGTCAANNN

NNNTTGACSTYN
PBM
Weirauch et al.(2014)
pTH5714
0.812 0.586
tll
M03932_2.00
Drosophila melanogaster
NRAGTCAAAAGTCA

TGACTTTTGACTYN
SELEX
Nitta et al.(2015)
tll_1
0.812 0.586
tll
M03933_2.00
Drosophila melanogaster
NRAGTCAADAAGTCA

TGACTTHTTGACTYN
SELEX
Nitta et al.(2015)
tll_2
0.812 0.586
tll
M06558_2.00
Drosophila melanogaster
WAAAGTCAAM

KTTGACTTTW
B1H
Mathelier et al.(2014)
MA0459.1
0.812 0.586
tll
M06424_2.00
Drosophila melanogaster
AAAGTYA

TRACTTT
B1H
Zhu et al.(2011)
tll_FlyReg_FBgn0003720
0.812 0.586
tll
M06425_2.00
Drosophila melanogaster
WAAAGTCAAM

KTTGACTTTW
B1H
Zhu et al.(2011)
tll_NAR_FBgn0003720
0.812 0.586
tll
M09688_2.00
Drosophila melanogaster
MAAAGTCAAH

DTTGACTTTK
Misc
Kulakovskiy et al.(2009)
tll
0.812 0.586
tll
M11190_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TLL_Q6
0.812 0.586
NR2E1
M02394_2.00
Homo sapiens
NGAGGTCARN

NYTGACCTCN
PBM
Weirauch et al.(2014)
pTH6281
0.797 0.586
Nr2e1
M00814_2.00
Mus musculus
NNNGTYRNNN

NNNYRACNNN
PBM
Weirauch et al.(2013)
pTH2936
0.797 0.586
A1YGC6_PANPA
M02421_2.00
Pan paniscus
NNGTCANNN

NNNTGACNN
PBM
Weirauch et al.(2014)
pTH5561
0.797 0.586
NR2E1
M03364_2.00
Homo sapiens
WDAAGTCAA

TTGACTTHW
SELEX
Jolma et al.(2013)
NR2E1_1
0.797 0.586
NR2E1
M03365_2.00
Homo sapiens
RARTCAWDAAGTCA

TGACTTHWTGAYTY
SELEX
Jolma et al.(2013)
NR2E1_2
0.797 0.586
Nr2e1
M03427_2.00
Mus musculus
WDAAGTCAW

WTGACTTHW
SELEX
Jolma et al.(2013)
Nr2e1_1
0.797 0.586
Nr2e1
M03428_2.00
Mus musculus
RRGTCAWDAAGTCA

TGACTTHWTGACYY
SELEX
Jolma et al.(2013)
Nr2e1_2
0.797 0.586
NR2E1
M05585_2.00
Homo sapiens
NNAAGTCAN

NTGACTTNN
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
0.797 0.586
NR2E1
M05586_2.00
Homo sapiens
NDAAGTCAN

NTGACTTHN
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
0.797 0.586
dsf
M06431_2.00
Drosophila melanogaster
AAAAGTCANH

DNTGACTTTT
B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381
0.762 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000003193 Nuclear receptor 61 130
ENSGMOP00000003211 Nuclear receptor 59 128
ENSGMOP00000003219 Nuclear receptor 55 124
ENSGMOP00000003287 Nuclear receptor 61 130

Links

Other Nuclear receptor family TFs
Other Gadus morhua TFs

587 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.000
ATMYB13 Arabidopsis thaliana AT1G06180 D 0.000
PK24260.1 Cannabis sativa PK24260.1 N 0.000
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N 0.000
evm.TU.supercontig_27.156 Carica papaya evm.TU.supercontig_27.156 N 0.000
Ca_22597 Cicer arietinum Ca_22597 N 0.000
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I 0.000
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I 0.000
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I 0.000
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I 0.000
Ciclev10017435m.g Citrus clementina Ciclev10017435m.g I 0.000
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I 0.000
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N 0.000
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I 0.000
Eucgr.L02563 Eucalyptus grandis Eucgr.L02563 N 0.000
Eucgr.I00828 Eucalyptus grandis Eucgr.I00828 N 0.000
Eucgr.D00037 Eucalyptus grandis Eucgr.D00037 N 0.000
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.000
Eucgr.D00050 Eucalyptus grandis Eucgr.D00050 N 0.000
Eucgr.D00044 Eucalyptus grandis Eucgr.D00044 N 0.000
Eucgr.D00042 Eucalyptus grandis Eucgr.D00042 I 0.000
Eucgr.D00040 Eucalyptus grandis Eucgr.D00040 I 0.000
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I 0.000
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I 0.000
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N 0.000
gene30736-v1.0-hybrid Fragaria vesca gene30736-v1.0-hybrid N 0.000
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.000
GLYMA06G45520 Glycine max GLYMA06G45520 N 0.000
GLYMA12G32541 Glycine max GLYMA12G32541 N 0.000
GLYMA12G32530 Glycine max GLYMA12G32530 I 0.000
GLYMA12G11490 Glycine max GLYMA12G11490 N 0.000
GLYMA12G11390 Glycine max GLYMA12G11390 N 0.000
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.000
GLYMA12G11340 Glycine max GLYMA12G11340 N 0.000
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.000
GLYMA06G45547 Glycine max GLYMA06G45547 N 0.000
GLYMA06G45540 Glycine max GLYMA06G45540 N 0.000
GLYMA06G45531 Glycine max GLYMA06G45531 N 0.000
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I 0.000
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I 0.000
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I 0.000
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I 0.000
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N 0.000
Gorai.010G148300 Gossypium raimondii Gorai.010G148300 N 0.000
Gorai.013G143200 Gossypium raimondii Gorai.013G143200 I 0.000
Gorai.013G143100 Gossypium raimondii Gorai.013G143100 N 0.000
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N 0.000
Lus10039734.g Linum usitatissimum Lus10039734.g I 0.000
Lus10022021.g Linum usitatissimum Lus10022021.g I 0.000
Lus10031607.g Linum usitatissimum Lus10031607.g N 0.000
Lus10033738.g Linum usitatissimum Lus10033738.g N 0.000
Lus10039735.g Linum usitatissimum Lus10039735.g I 0.000
Lus10042561.g Linum usitatissimum Lus10042561.g I 0.000
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N 0.000
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N 0.000
MDP0000289283 Malus domestica MDP0000289283 I 0.000
MDP0000131822 Malus domestica MDP0000131822 I 0.000
MDP0000155426 Malus domestica MDP0000155426 I 0.000
MDP0000407613 Malus domestica MDP0000407613 N 0.000
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.000
cassava26894.m1 Manihot esculenta cassava26894.m1 N 0.000
cassava47180.m1 Manihot esculenta cassava47180.m1 I 0.000
cassava5263.m1 Manihot esculenta cassava5263.m1 N 0.000
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I 0.000
MTR_7g096930 Medicago truncatula MTR_7g096930 I 0.000
MTR_2g089420 Medicago truncatula MTR_2g089420 N 0.000
MTR_0008s0390 Medicago truncatula MTR_0008s0390 N 0.000
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N 0.000
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N 0.000
MTR_2g089450 Medicago truncatula MTR_2g089450 N 0.000
GSMUA_Achr8G14540_001 Musa acuminata GSMUA_Achr8G14540_001 N 0.000
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I 0.000
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I 0.000
GSMUA_Achr1G09180_001 Musa acuminata GSMUA_Achr1G09180_001 I 0.000
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I 0.000
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I 0.000
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I 0.000
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I 0.000
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.000
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N 0.000
POPTR_0011s04020 Populus trichocarpa POPTR_0011s04020 N 0.000
Pm015302 Prunus mume Pm015302 N 0.000
Pm009880 Prunus mume Pm009880 N 0.000
PRUPE_ppa015081mg Prunus persica PRUPE_ppa015081mg N 0.000
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.000
29933.m001454 Ricinus communis 29933.m001454 N 0.000
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N 0.000
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I 0.000
Solyc10g005460.2 Solanum lycopersicum Solyc10g005460.2 I 0.000
Solyc07g055000.1 Solanum lycopersicum Solyc07g055000.1 N 0.000
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N 0.000
Solyc07g053240.2 Solanum lycopersicum Solyc07g053240.2 I 0.000
Solyc07g053230.2 Solanum lycopersicum Solyc07g053230.2 I 0.000
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N 0.000
PGSC0003DMG400026176 Solanum tuberosum PGSC0003DMG400026176 N 0.000
PGSC0003DMG401026177 Solanum tuberosum PGSC0003DMG401026177 I 0.000
PGSC0003DMG402026177 Solanum tuberosum PGSC0003DMG402026177 I 0.000
PGSC0003DMG400011250 Solanum tuberosum PGSC0003DMG400011250 I 0.000
TCM_007868 Theobroma cacao TCM_007868 I 0.000
TCM_007865 Theobroma cacao TCM_007865 I 0.000
TCM_030020 Theobroma cacao TCM_030020 I 0.000
TRIUR3_31731 Triticum urartu TRIUR3_31731 I 0.000
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I 0.000
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.000