NR1I3 (Loxodonta africana)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSLAFG00000001180 T303523_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr1i3
M09302_2.00 		Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C 		0.988 0.871
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.974 0.857
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.974 0.857
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.974 0.857
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.974 0.857
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.881 0.643
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.869 0.586
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.869 0.586
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.869 0.586
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.869 0.586
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.869 0.586
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.869 0.586
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.869 0.586
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.869 0.586
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.869 0.586
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.838 0.586
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.791 0.571
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.791 0.571
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.791 0.571
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.791 0.571
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000000995 Nuclear receptor 18 87

Links

Other Nuclear receptor family TFs
Other Loxodonta africana TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NR1I3 Procavia capensis ENSPCAG00000013933 I 0.993
NR1I3 Canis familiaris ENSCAFG00000012921 I 0.993
NR1I3 Equus caballus ENSECAG00000020930 I 0.992
ENSMPUG00000014388 Mustela putorius furo ENSMPUG00000014388 I 0.992
NR1I3 Oryctolagus cuniculus ENSOCUG00000013537 I 0.991
NR1I3 Otolemur garnettii ENSOGAG00000013738 I 0.991
ENSDORG00000001701 Dipodomys ordii ENSDORG00000001701 I 0.990
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.990
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.990
NR1I3 Felis catus ENSFCAG00000000497 I 0.990
NR1I3 Bos taurus ENSBTAG00000009215 I 0.990
NR1I3 Pteropus vampyrus ENSPVAG00000005540 I 0.989
NR1I3 Dasypus novemcinctus ENSDNOG00000045179 I 0.989
Nr1i3 Mus musculus ENSMUSG00000005677 D 0.988
NR1I3 Ochotona princeps ENSOPRG00000003455 I 0.988
Nr1i3 Rattus norvegicus ENSRNOG00000003260 I 0.988
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.987
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.986
NR1I3 Monodelphis domestica ENSMODG00000005089 I 0.986
ENSSTOG00000003818 Ictidomys tridecemlineatus ENSSTOG00000003818 I 0.986
NR1I3 Erinaceus europaeus ENSEEUG00000004981 I 0.986
NR1I3 Sorex araneus ENSSARG00000002684 I 0.985
NR1I3 Cavia porcellus ENSCPOG00000015331 I 0.983
ENSAMEG00000015383 Ailuropoda melanoleuca ENSAMEG00000015383 I 0.983
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.982
NR1I3 Callithrix jacchus ENSCJAG00000004783 I 0.976
NR1I3 Pan troglodytes ENSPTRG00000001582 I 0.974
ENSNLEG00000014287 Nomascus leucogenys ENSNLEG00000014287 I 0.974
NR1I3 Homo sapiens ENSG00000143257 D 0.974
ENSP00000356959 Macaca fascicularis ENSP00000356959 I 0.973
ENSPANG00000014194 Papio anubis ENSPANG00000014194 I 0.973
ENSCSAG00000002676 Chlorocebus sabaeus ENSCSAG00000002676 I 0.973
NR1I3 Macaca mulatta ENSMMUG00000018128 I 0.973
NR1I3 Gorilla gorilla ENSGGOG00000005724 I 0.969
ENSTSYG00000003712 Tarsius syrichta ENSTSYG00000003712 I 0.966
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.940
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.940
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.934
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.919
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.918
NR1I3 Tursiops truncatus ENSTTRG00000009227 I 0.907
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.898
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.892
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.892
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.887
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.886
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.881
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.881
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.879
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.871
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.871
Aan_R009572 Calypte anna Aan_R009572 I 0.871
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.871
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.871
VDR Canis familiaris ENSCAFG00000009103 I 0.869
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.869
VDR Otolemur garnettii ENSOGAG00000005480 I 0.869
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.869
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.869
VDR Tupaia belangeri ENSTBEG00000005717 I 0.869
VDR Tursiops truncatus ENSTTRG00000012578 I 0.869
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.869
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.869
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.869
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.869
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.869
VDR Sus scrofa ENSSSCG00000020864 I 0.869
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.869
VDR Bos taurus ENSBTAG00000016414 I 0.869
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.869
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.869
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.869
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.869
VDR Felis catus ENSFCAG00000024594 I 0.869
VDR Microcebus murinus ENSMICG00000009017 I 0.869
VDR Myotis lucifugus ENSMLUG00000000912 I 0.869
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.869
VDR Homo sapiens ENSG00000111424 D 0.869
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.869
VDR Gorilla gorilla ENSGGOG00000016473 I 0.869
VDR Loxodonta africana ENSLAFG00000006418 I 0.869
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.869
VDR Macaca mulatta ENSMMUG00000006727 I 0.869
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.869
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.869
Vdr Mus musculus ENSMUSG00000022479 D 0.869
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.869
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.869
VDR Equus caballus ENSECAG00000015822 I 0.869
VDR Callithrix jacchus ENSCJAG00000015018 I 0.869
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.861
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.853
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.841
vdrb Danio rerio ENSDARG00000070721 I 0.841
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.841
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.841
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.841
vdra Takifugu rubripes ENSTRUG00000011907 I 0.841
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.841
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.841
vdralpha Oryzias latipes ENSORLG00000001063 I 0.841
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.841
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.841
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.841
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.841
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.841
vdr Oryzias latipes ENSORLG00000016402 I 0.841
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.839
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.839
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.838
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.836
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.836
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.834
NEMVEDRAFT_v1g165424 Nematostella vectensis NEMVEDRAFT_v1g165424 I 0.833
VDR Anolis carolinensis ENSACAG00000013485 I 0.831
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.831
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.831
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.823
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.823
NR1I2 Felis catus ENSFCAG00000006092 I 0.823
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.818
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.818
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.807
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.807
vdr Xenopus tropicalis XB-GENE-486505 I 0.800
vdr.S Xenopus laevis XB-GENE-864847 I 0.800
NR6A1 Pan troglodytes ENSPTRG00000021357 I 0.796
NR5A1 Meleagris gallopavo ENSMGAG00000008342 I 0.794
HelroG108893 Helobdella robusta HelroG108893 I 0.793
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.791
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.791
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.791
NR1I2 Equus caballus ENSECAG00000008728 I 0.791
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.791
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.791
NR1I2 Homo sapiens ENSG00000144852 D 0.791
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.791
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.791
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.791
nr1i2 Danio rerio ENSDARG00000029766 I 0.788
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.777
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.767
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.764
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.758
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.758
NR1I2 Bos taurus ENSBTAG00000019557 I 0.758
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.756
vdr-a Ciona intestinalis ENSCING00000020740 I 0.750
nr1i3 Xenopus tropicalis XB-GENE-479859 I 0.749